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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTGAAGCTCATGGAAAAAGTGCGTATTCACGTTTATATGAAGGCCACAGCGTCAATACACATTTGCTTCGATCTACAATGgtaataatcatcagattcatcattaggtgttgaaatcattgatctttggtttgaatcatatatacatgatttggtgttgtttatcag

Basic information

species Arabidopsis thaliana
transcript AT5G27395.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116484011|gb|EG526603.1|EG526603
EST:     GTTTATATGAAGGCCACAGCGTCAATACACATTTGCTTCGATCTACAATG                         ATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAA
genomic: GTTTATATGAAGGCCACAGCGTCAATACACATTTGCTTCGATCTACAATGgtaataatca ... tgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAA
EST: gi|125301494|gb|EL315579.1|EL315579
EST:     GTTTATATGAAGGCCCCAGCGTCAATACACATTTGCTTCGATCTACAATG                         ATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTA
genomic: GTTTATATGAAGGCCACAGCGTCAATACACATTTGCTTCGATCTACAATGgtaataatca ... tgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTA
EST: gi|116484010|gb|EG526602.1|EG526602
EST:     GTTTATATGAAGGCCACAGCGTCAATACACATTTGCTTCGATCTACAATG                         ATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAA
genomic: GTTTATATGAAGGCCACAGCGTCAATACACATTTGCTTCGATCTACAATGgtaataatca ... tgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAA
EST: gi|125199916|gb|EL214870.1|EL214870
EST:     GATCTACAATG                         ATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTACTGCTACAACGCA
genomic: GATCTACAATGgtaataatca ... tgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGT-CTGCTACAACGCA
EST: gi|152035117|gb|BP845312.2|BP845312
EST:     GTTTATATGAAGGCCACAGCGTCAATACACATTTGCTTCGATCTACAATG                         ATTGCAGAGTTTTGGCCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAA
genomic: GTTTATATGAAGGCCACAGCGTCAATACACATTTGCTTCGATCTACAATGgtaataatca ... tgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAA
EST: gi|86015126|gb|DR310872.1|DR310872
EST:     GTTTATATGAAGGGCACAACGTCAATACACATTTGCTTCGATCTACAATG                         ATTGCAGAGTCTTTACCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAA
genomic: GTTTATATGAAGGCCACAGCGTCAATACACATTTGCTTCGATCTACAATGgtaataatca ... tgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAA