1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATGTTTTACAAGAAGTGGTTGGCGAAGAACGAAAGAGGATTTTATACGGGAGgtagaaacatattcatgcattattagactgggatatttgctttgcagatgtcttaatacatgtcaaaactctaaatttcag
species | Arabidopsis thaliana |
transcript | AT5G27395.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTTTACAAGAAGTGGTTGGCGAAGAACGAAAGAGGATTTTATACGGGAG CTAAGAAGTGCCTACGCTATCGCTAAGTTAAGAAAGACTGGGTATTCGAAGEST: gi|116484010|gb|EG526602.1|EG526602
genomic: GTTTTACAAGAAGTGGTTGGCGAAGAACGAAAGAGGATTTTATACGGGAGgtagaaacat ... taaatttcagCTAAGAAGTGCCTACGCTATCGCTAAGTTAAGAAAGACTGGGTATTCGAAG
EST: GTTTTACAAGAAGTGGTTGGCGAAGAACGAAAGAGGATTTTATACGGGAG CTAAGAAGTGCCTACGCTATCGCTAAGTTAAGAAAGACTGGGTATTCGAAGEST: gi|86015126|gb|DR310872.1|DR310872
genomic: GTTTTACAAGAAGTGGTTGGCGAAGAACGAAAGAGGATTTTATACGGGAGgtagaaacat ... taaatttcagCTAAGAAGTGCCTACGCTATCGCTAAGTTAAGAAAGACTGGGTATTCGAAG
EST: GTTTTACAAGAAGTGGTTGGCGAATAACGAAAGAGGATTTTATACGGGAG CTAAGAAGTGCCTACGCTATCGCTAAGTTAAGAAAGACTGGGTATTCGAAG
genomic: GTTTTACAAGAAGTGGTTGGCGAAGAACGAAAGAGGATTTTATACGGGAGgtagaaacat ... taaatttcagCTAAGAAGTGCCTACGCTATCGCTAAGTTAAGAAAGACTGGGTATTCGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTTTACAAGAAGTGGTTGGCGAAGAACGAAAGAGGATTTTATACGGGAGgtagaaacatattcatgcattattagactgggatatttgctttgcagatgtcttaatacatgtcaaaactctaaatttcag
- - - - AAGAAG
- - - - - AGAAGT
- - - - - - - - - - - CGAAGA
- - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - GAGGAT