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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTGTTGGCCCTGTTCAATGGCTGAAGCCATACACCGATGAGGTTCTTGTCGACCTTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCAGgtgagagaccatataataatccctgttagctcatttccgtattgtggaagagatactttccaagcgtccattatcagattcgttagttattgatcatttcggctttcttatttttctttcatatcttggatctttcag

Basic information

species Arabidopsis thaliana
transcript AT5G26030.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26030.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv04s0008g00800.t01 (Vitis vinifera), 5'ss of exon 8
GTCGTGTTGGCCCTGTTCAATGGCTGAAGCCATACACCGATGAGGTTCTTGTCGACCTTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCAGgtgagagaccatataataatccctgttagctcatttccgtattgtggaagagatactttccaagcgtccattatcagattcgttagttattgatcatttcggctttcttatttttctttcatatcttggatctttcag
|||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||| || |||||  | |  ||||| || ||||| || || |||||||| ||||  |    ||| ||||| |     |      ||||  | |||||        |   |||  ||  | ||| ||  | ||| | | ||    ||||||||  |  | | | |||                        
GTCGAGTTGGTCCTGTACAATGGCTGAAACCATACACTGATGAAGTTCTTGTTGAGCTTGGCCAAAAGGGTGTAAAAAGTCTCCTTGCTGTTCCAGTAAGgtatg---tcat-taatagttaaaataga---atttgtg-attgttct-----tgtcttc--agtttgcatcat--gcttcat-acttccacatcatttctcccatttcaatttctgg--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125021502|gb|EL093771.1|EL093771
EST:     TTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCAG                         TTTCGTGAGTGAGCACATTGAGACACTTGAGGAGATAGACATGGAGTATAG
genomic: TTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCAGgtgagagacc ... gatctttcagTTTCGTGAGTGAGCACATTGAGACACTTGAGGAGATAGACATGGAGTATAG