Sequence
atgc intronic sequence ATGC exonic sequencegtgagagaccatataataatccctgttagctcatttccgtattgtggaagagatactttccaagcgtccattatcagattcgttagttattgatcatttcggctttcttatttttctttcatatcttggatctttcagTTTCGTGAGTGAGCACATTGAGACACTTGAGGAGATAGACATGGAGTATAGGGAATTAGCTCTTGAGTCAGGGGTAGAGAACTGGGGACGGGTACCCGCG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G26030.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G26030.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G047095_T04 (Zea mays), 3'ss of exon 9
gtgagagaccatataataatccctgttagctcatttccgtattgtggaaga-gatactttccaagcgtccattatcagattcgttagttattgatcatttcggctttcttatttttctttcatatcttggatctttcagTTTCGTGAGTGAGCACATTGAGACACTTGAGGAGATAGACATGGAGTATAGGGAATTAGCTCTTGAGTCAGGGGTAGAGAACTGGGGACGGGTACCCGCG
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----------------------------gcaaattgcgatatgctagtatctggtttactctgtttacctgtca--agattatgttgctgttgttaat----gatgtaatgtgagccatttatgac--gaata---cagCTTCGTGAGCGAGCACATTGAGACACTGGAAGAAATAGACATGGAGTACAAGGAGTTGGCTCTGGAATCAGGCATTGAGAACTGGGGCCGGGTCCCTGCT
upper sequence: AT5G26030.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA04G05320.1 (Glycine max), 3'ss of exon 8
----gtgagagaccatataataatccctgttagctcatttccgtattgtggaagagatactttccaagcgtccattatcagattcgttagttattgatcatttcggctttcttatttttctttcatatcttggatctttcagTTTCGTGAGTGAGCACATTGAGACACTTGAGGAGATAGACATGGAGTATAGGGAATTAGCTCTTGAGTCAGGGGTAGAGAACTGGGGACGGGTACCCGCG
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gtacattattattgatattttacgcatgttgattttaattctagacagtagcatatggattttata---gtacgttacttg--ttgcaagttgtgaatatcccagagattaaaagtaatcttgtct-tcttgtgtcc--cagTTTTGTGAGTGAGCATATTGAAACCCTTGAAGAAATTGACATGGAGTACAAGGAATTGGCTCTTGAATCTGGCATCAAGAATTGGGCACGTGTACCTGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125021502|gb|EL093771.1|EL093771EST: TTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCAG TTTCGTGAGTGAGCACATTGAGACACTTGAGGAGATAGACATGGAGTATAG
genomic: TTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCAGgtgagagacc ... gatctttcagTTTCGTGAGTGAGCACATTGAGACACTTGAGGAGATAGACATGGAGTATAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagttattgatcatttcggctttcttatttttctttcatatcttggatctttcagTTTCGTGAGTGAGCACATTGAGACACTTGAGGAGATAGACATGGAGTATAGGGAATTAGCTCTTGAGTCAGGGGTAGAGAACTGGGGACGGGTACCCGCG
tattgat putative branch site (score: 3)
tctttc putative PPT
tttcttatttttcttt TA-rich tract