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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctaatcatccgatataaacgttgcttggcattacctctttatgtcaagtcctctaattgattcttgcaataatcatttcttctccagAGTCGTGTTGGCCCTGTTCAATGGCTGAAGCCATACACCGATGAGGTTCTTGTCGACCTTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCA

Basic information

species Arabidopsis thaliana
transcript AT5G26030.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26030.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G047095_T04 (Zea mays), 3'ss of exon 8
-------------------------------------------------------------------------------------gtttgttctaatcatccgatataaacgttgcttggcat-tacctctttatgtca--agtcctctaattgattc-ttgcaataatcatttcttct----ccagAGTCGTGTTGGCCCTGTTCAATGGCTGAAGCCATACACCGATGAGGTTCTTGTCGACCTTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCA
                                                                                        |  |   |  |   || |   |   |||   |  | ||    | |  || |  |||  |||  |   ||   |    | | |||||||| |     |||||||| || || || |||||||||||||||||||| || ||||| ||| | || || |||||| |||  ||||| ||||| || || || |||||||| |
gtataggctattaaaatttgatatgtacttgtgtcactaacaacttcgaagctgtgcacttatgtttaagtgatcagatatgattaccttgtaagaaaactagaaaccgaaaatgccaagtttatagagttctgagttaccagttttctggtcagtttactagtgttaacatttcttttacatgcagAGTCGGGTGGGACCAGTTCAATGGCTGAAGCCATATACTGATGAAGTTTTAGTAGAACTTGGTCAGAACGGTGTGAAGAGCCTCCTGGCTGTTCCAGTAA

upper sequence: AT5G26030.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv04s0008g00800.t01 (Vitis vinifera), 3'ss of exon 7
--------------------------------------------------------------------------gtttgttctaatca--tccgatataaacgttgcttggcattacctctttat---------gtcaagtcctct-------aattgattcttgcaat--aatcatttcttctccagAGTCGTGTTGGCCCTGTTCAATGGCTGAAGCCATACACCGATGAGGTTCTTGTCGACCTTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCA
                                                                          |  || |||  | |  | |    |||  |||| ||  | |  |||| | |          |  ||||    |         |  | || | ||||   || |||| |||| |||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||| || |||||  | |  ||||| || ||||| || || |||||||| |
gttggtcataaaatttgagttcttaagttcaagtttctgtttccaagtgttgcatgattatcggctctatgtcaggctgctctctttactttctgcttaactgttgattttcttctcctcctcactacataggggctaagtttattttgtgttgctcaactccttcaatttgattattt-ttcttcagAGTCGAGTTGGTCCTGTACAATGGCTGAAACCATACACTGATGAAGTTCTTGTTGAGCTTGGCCAAAAGGGTGTAAAAAGTCTCCTTGCTGTTCCAGTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctctttatgtcaagtcctctaattgattcttgcaataatcatttcttctccagAGTCGTGTTGGCCCTGTTCAATGGCTGAAGCCATACACCGATGAGGTTCTTGTCGACCTTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCA
                                        tcatttcttctcc  CT-rich tract
                                   aataatcatttctt  TA-rich tract