Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAAGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttgacttaactcggcttattcactcttgtttaatagcttaaatattctttaatcgcatccttttcacaaatcctgtgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttggcccagctttggtgtatttttgttactcagttaaagatatcgtggatacttatatatctttggttagtacag

Basic information

species Arabidopsis thaliana
transcript AT5G22770.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G137236_T01 (Zea mays), 5'ss of exon 7
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAAGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttgacttaactcggcttattcactcttgtttaatagcttaaatattctttaatcgcatccttttcacaaatcctgtgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttggcccagctttggtgtatttttgttactcagttaaagatatcgtggatacttatatatctttggttagtacag
|||||| ||||||||||| | |||||| ||  |  | || || || |||||| |||| || |||||||| |||||||| || |||||||||||||| |||||  |     |||   |||        |  |  | |     |  | |  | ||   | |   ||     | ||    || |||| |      |||   |  |||||    | |                                                                                     
TTGTCTTCCTAAATGTGTGAGAATATTGGAGAGGTTAGCAAGAAATCAAGATATTCCACAAGAGTACACTTACTATGGAATTCCATCTCCTTGGCTTCAGgtacgt----acttccctttcatgtcatcatccattcatccagct-tgatctatcagtaaaattaggctagat---atgtatttaa------ttactggtcattaggccgttac------------------------------------------------------------------------------------

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 6
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAAGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttg---acttaactcggcttattcactct-tgtttaatagcttaaatattcttt-aatcgcatccttttcacaaatcctgtgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttggcccagctttggtgtatttttgttactcagttaaagatatcgtggatacttatatatctttggttagtacag
|||||| ||||| ||| ||||||| |||||||| |||||||||||||| ||| | || || || ||||| ||||| || ||||||||||| ||||| ||||||||   | |||       || |  |  ||    |||  |||||   | |  |   || |  |    ||  || ||   | | | | |  | ||  |||       ||||  | | | |||    ||||     ||                                                                  
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtaaatttaggaatatttttgaatgctactcttaccagcttgcttttattgagaaccaaaaatgttgaactaaattttttcttatccagcaagttaaccttttttagtgtttaacaatttttgcttactgtag------------------------------------------------------------------

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 6
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAAGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttgacttaactcggcttattcactcttgtttaatagcttaaatattctttaatcgcatccttttcacaaatcctgtgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttggcccagctttggtgtatttttgttactcagttaaagatatcgtggatacttatatatctttggttagtacag
|||||| ||||| ||| ||||||| |||||||| |||||||||||||| ||| | || || || ||||| ||||| || ||||||||||| ||||| ||||||||  | || |       ||   | |  |  ||||  ||      ||| || | || |   ||| |  ||      |  |||| ||   |     |  |  | |||| |    | |       |        |   | | || || |    ||  | ||  | |  | | |  |||   || |||| ||| |  ||
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttg--tgaatt-------tttcttttcatcaaatatatt------tctgtattggcttgggttttaggaa------gatttttgaatgctactcttacagcttgcttttattgagaaccaaaagtgttgaactaaattttttcttatccagcaagttaaccttttttag-tgtttaacaatttttgcttaatgtag

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 6
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAAGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttgacttaactcggcttattcactcttgtttaatagcttaaatattctttaatcgcatccttttcacaaatcctgtgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttggcccagctttggtgtatttttgttactcagttaaagatatcgtggatacttatatatctttggttagtacag
|||||| || || ||||| || ||  | ||  | ||||||||||| || |||||||| || || ||||| |||||||| |||||| |||| ||||| ||||||||  |       ||  |||  || ||  |||||  || || || | |    |   |          | |   ||   |  | ||| |  || |||  |   ||                                                                                            
TTGTCTCCCAAAGTGTGTTAAGATTCTGGAGAGGCTTGCTAGGAATCAGGATGTTCCACAAGAATACACTTACTATGGTATCCCAACTCCCTGGCTTCAGgtttgtgt-------gcccattttct-ttacttaatccctaaagtaatatgggctgaaaaaaaaaaataacaagatgaaaaaataaaaaacctt-tgttcagccaggca-----------------------------------------------------------------------------------------

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ34224 (Selaginella moellendorffii), 5'ss of exon 6
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAAGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttgacttaactcggcttattcactcttgtttaatagcttaaatattctttaatcgcatccttttcacaaatcctgtgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttggcccagctttggtgtatttttgttactcagttaaagatatcgtggatacttatatatctttggttagtacag
 ||  |  | ||||| ||     |  | || ||| |  | |||| ||||||| |||||||||||||||||||||| || || |||||||||||||||||||||||  ||   |||   | ||  |    | || |       || |   | |   | | | || || |   ||  || |||                                                                                                                     
CTGCGTTTCAAAATGCGTTCGTGTTCTGGAGCGCTTAACCAGGAGCCAAGATATTCCTCAGGAGTACACATACTACGGTATTCCATCTCCTTGGCTCCAGgtttgtttttcgtcgatgtttttgc----ggttgactttgggaacaccatatttactctttctgtttagtgatt-tgagcag--------------------------------------------------------------------------------------------------------------------