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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCAAACCCTAATAATCTAGTGGCAAGTACAACCTTCTACTCTGAAAGTACAGGAGCCATTCTCTGTTTGgtgagatcataaccaagttttacttcctggttttggcacttgccgctcttccaattcctaaaatttcttgagacttatagtaataacgtgatgctgcactcccaaaagttctcaaaagcctgtctgttgtgtgacattgtccgtggtttgctattgtcag

Basic information

species Arabidopsis thaliana
transcript AT5G22770.3
intron # 26
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164094903|gb|ES054420.1|ES054420
EST:     GGAGCCATTTTCTGTTTG                         GCAAGAATAGAAACAGACCCAGCGGACAGAACCCAATTGCGAATGACAGTA
genomic: GGAGCCATTCTCTGTTTGgtgagatcat ... ctattgtcagGCAAGAATAGAAACAGACCCAGCGGACAGAACCCAATTGCGAATGACAGTA
EST: gi|116477155|gb|EG519747.1|EG519747
EST:     TACTCTGAAAGTACAGGAGCCATTCTCTGTTTG                         GCAAGAATAGAAACAGACCCAGCGGACAGAACCCAATTGCGAATGACAGTA
genomic: TACTCTGAAAGTACAGGAGCCATTCTCTGTTTGgtgagatcat ... ctattgtcagGCAAGAATAGAAACAGACCCAGCGGACAGAACCCAATTGCGAATGACAGTA
EST: gi|116477154|gb|EG519746.1|EG519746
EST:     TGGCAAGTACAACCTTCTACTCTGAAAGTACAGGAGCCATTCTCTGTTTG                         GCAAGAATAGAAACAGACCCAGCGGACAGAACCCAATTGCGAATGACAGTA
genomic: TGGCAAGTACAACCTTCTACTCTGAAAGTACAGGAGCCATTCTCTGTTTGgtgagatcat ... ctattgtcagGCAAGAATAGAAACAGACCCAGCGGACAGAACCCAATTGCGAATGACAGTA