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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttctttttcaccattacagttaaacaaaaatgtttggttctgtaaaattcactcaatctctcactacttcagGGAGATTGGAATGGTGCAGGGGCACACACAAATTACAG

Basic information

species Arabidopsis thaliana
transcript AT5G16570.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124902876|gb|EH976956.1|EH976956
EST:     CACAGAATTGGCTTGGAGTTGTTCTGTCTCTAGACCCTAAACCAATTCCG                         GGAGATTGGAATGGTGCAGGGGCACACACAAATTACAGTACGAAG
genomic: CACAGAATTGGC-TGGAGTTGTTCTGTCTCTAGACCCTAAACCAATTCCGgtttgttttc ... actacttcagGGAGATTGGAATGGTGCAGGGGCACACACAAATTACAGTACGAAG
EST: gi|125299414|gb|EL313499.1|EL313499
EST:     TCACAGAATTGGCTGGAGTTGTTCTGTCTCTAGACCCTAAACCAATTCCG                         G-AGATTGGAATGGTGCAGGGGCACACACAAAT
genomic: TCACAGAATTGGCTGGAGTTGTTCTGTCTCTAGACCCTAAACCAATTCCGgtttgttttc ... actacttcagGGAGATTGGAATGGTGCAGGGGCACACACAAAT
EST: gi|124735050|gb|EH826452.1|EH826452
EST:     AGAATTGGCTGGAGTTGTTCTGTCTCTAGACCCTAAACCAATTCCG                         GGAGATTGGAATGGTGCAGGGGCACACACAAATTACAG
genomic: AGAATTGGCTGGAGTTGTTCTGTCTCTAGACCCTAAACCAATTCCGgtttgttttc ... actacttcagGGAGATTGGAATGGTGCAGGGGCACACACAAATTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttaaacaaaaatgtttggttctgtaaaattcactcaatctctcactacttcagGGAGATTGGAATGGTGCAGGGGCACACACAAATTACAG
                                        ctctcac  putative branch site (score: 3)
                                       tctctcactacttc  CT-rich tract
        aaaaatgttt  TA-rich tract