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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacttctcccagcgatcaaactaaaatccatattgacctcaacactaaatttctttttataaaaaaagaacaaatctttgtcaatgaaaacagGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATCGTTGATTCTCATTACAAAGCTTGTCTTTACGCCGGAATCAATGTCAGTG

Basic information

species Arabidopsis thaliana
transcript AT5G16570.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124846321|gb|EH930758.1|EH930758
EST:     CCGGTAGGTTGGCCGGTCGGCGGTTTTCCCAGGTCCTCAG                         GGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATC
genomic: CCGGTAGGTTGGCCGGTCGGCGG-TTTCCCAGGTCCTCAGgtaaaacttc ... atgaaaacagGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATC
EST: gi|125231067|gb|EL245152.1|EL245152
EST:     ATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGGTTTCCCAGGTCCTCAG                         GGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGG
genomic: ATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGGTTTCCCAGGTCCTCAGgtaaaacttc ... atgaaaacagGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGG
EST: gi|124901559|gb|EH975639.1|EH975639
EST:     CCGGTCGGCGGTTTCCCAGGTCCTCAG                         GGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATC
genomic: CCGGTCGGCGGTTTCCCAGGTCCTCAGgtaaaacttc ... atgaaaacagGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATC
EST: gi|124779994|gb|EH869937.1|EH869937
EST:     TGGCCGGTAGGTTGGCCGGTCGGCGGTTTCCCAGGTCCTCAG                         GGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATC
genomic: TGGCCGGTAGGTTGGCCGGTCGGCGGTTTCCCAGGTCCTCAGgtaaaacttc ... atgaaaacagGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaacactaaatttctttttataaaaaaagaacaaatctttgtcaatgaaaacagGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAGAGACATCGTTGATTCTCATTACAAAGCTTGTCTTTACGCCGGAATCAATGTCAGTG
    cactaaa  putative branch site (score: 2)
     actaaatttcttttta  TA-rich tract