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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAACAGCTCAGAGTGTGCAGACTATGATTGTGGGACGTCTGCTCGCTGGAATTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaatactgattttcattatttttgcacttttagcataagatgttagatttgtttatatgttatgtctctgaagcgtttgatgatggttgtcag

Basic information

species Arabidopsis thaliana
transcript AT5G16150.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 6
TGCAACAGCTCAGAGTGTGCAGACTATGATTGTGGGACGTCTGCTCGCTGGAATTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaatactgattttcattatttttgcac---------ttttagcataagatgttagatttgtttatat----gttatgtctctgaagcgtttgatgatggttgtcag-------------------------
 |||||||||||   | | |  || |||||| | || ||  |||| ||||||||||| ||||| |||||||| ||  ||||||| ||||||||||||||||||||   |  |   |    || |   ||||  |         |  |    | | ||| || | ||  || | |    |||   |  ||   || |    ||| |    ||                           
CGCAACAGCTCAAGATATCCGCACCATGATTATTGGTCGGTTGCTTGCTGGAATTGGTATTGGGATCTCATCTGCACTTGTACCCCTTTACATATCTGAGgttgtgatacgatgaaacgacagttgctttgttcaaaacctgatgctgttgtgaaatgctacagttacttctgtctttgttcaatagctactgcatgcattgacgaacatctccaacaaatgaacttgtactttgcag

upper sequence: AT5G16150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G153704_T01 (Zea mays), 5'ss of exon 10
TGCAACAGCTCAGAGTGTGCAGACTATGATTGTGGGACGTCTGCTCGCTGGAATTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaatactgattttcattatttttgcacttttagcataa-gatgtta-gatttgtttatatgt-tatgtctctgaa-gcgtttgatga-tggttgtcag-----------
||||||||||||   | | |  || |||||| | || ||  |||| ||||||||||| || ||  ||||||| ||  ||||||| ||||||||||||||||||||  | |   |||  |  |   ||  |    |   | | ||| | ||||  ||| |||   | ||  | |||   ||||        |  | ||  | ||             
TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGGAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtg-atacgttgacatg-acagttgctttgttcaaaacctaatgctgttgtgatatgtacttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctgcag

upper sequence: AT5G16150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 6
TGCAACAGCTCAGAGTGTGCAGACTATGATTGTGGGACGTCTGCTCGCTGGAATTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaatactgattttcattatttttgcacttttagcataagatgttagatttgtttatatgttatgtctctgaagcgtttgatgatggttgtcag
||| ||||| ||||||||||||||||||||  | ||  |  | || ||||| ||||||||||| |||||||| ||  |||| |||||||||||||||||||| ||     | |   ||||||||||| ||    || |   ||    |||| | |||  | |     | ||   ||||| |   |  | |   | |||||
TGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAGgtagtaatgtttcaatttttcattattatta---ttatgctattttttgttcgtttttatgaatgcctttgaaactgaaacacattttaa--atggtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124729138|gb|EH820540.1|EH820540
EST:     TTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAG                         ATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAG
genomic: TTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaa ... tggttgtcagATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAG
EST: gi|164028401|gb|ES205992.1|ES205992
EST:     GGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAG                         ATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTC
genomic: GGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaa ... tggttgtcagATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTC
EST: gi|163999189|gb|ES179449.1|ES179449
EST:     GGAATTGGAATCTCATCAGCGATTGTACCACTTTAACATATCTGAG                         ATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTC
genomic: GGAATTGGAATCTCATCAGCGATTGTACCACTTT-ACATATCTGAGgttgtttaaa ... tggttgtcagATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTC
EST: gi|164237903|gb|ES032559.1|ES032559
EST:     GAATTGGAATTGGAATCTCATCATCGATTGTACCACTTTACATATCTGAG                         ATATCACCAACTGAAATCC
genomic: GAATTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaa ... tggttgtcagATATCACCAACTGAAATCC
EST: gi|124767061|gb|EH857191.1|EH857191
EST:     ATCTCATCAGCGATTGTACCACTTTACATATCTGAG                         ATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTC
genomic: ATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaa ... tggttgtcagATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTC