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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactaaatactacactgtttttatcttggtgtgatcatggatgatgatgttctattggactgaatcagGGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G16150.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16150.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G098011_T02 (Zea mays), 3'ss of exon 3
----------------------------------------------------------------------------------------------------------gtatgactaaatactacactgtttttatcttg---gtgtgatcatggat-gatgatgt------tctattggactgaat-cagGGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAG
                                                                                                            ||   |  || ||   |||   ||||||||        |  |  | | ||| ||        || |||  |  ||||  || ||||| |||||||| |||||||||||||| ||||||||||| || || |||||| | || || ||  
gtatgtactttatcactactacaagatgattgtttcttaaacacaattggataaagcataatttactgcattttaattgatgaaaatgaataacaagctgaaaataaaatagttccat-cttttctgcacttatcttgtgaacacaaaaactgttagataataccaggaatccatttcatggaatgtagTGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAG-

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G098011_T01 (Zea mays), 3'ss of exon 3
----------------------------------------------------------------------------------------------------------gtatgactaaatactacactgtttttatcttg---gtgtgatcatggat-gatgatgt------tctattggactgaat-cagGGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAG
                                                                                                            ||   |  || ||   |||   ||||||||        |  |  | | ||| ||        || |||  |  ||||  || ||||| |||||||| |||||||||||||| ||||||||||| || || |||||| | || || || |
gtatgtactttatcactactacaagatgattgtttcttaaacacaattggataaagcataatttactgcattttaattgatgaaaatgaataacaagctgaaaataaaatagttccat-cttttctgcacttatcttgtgaacacaaaaactgttagataataccaggaatccatttcatggaatgtagTGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGG

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G153704_T01 (Zea mays), 3'ss of exon 7
---------------------------------------------------------------------------------------------------gtatgactaaatactacactgttttta---tcttggtgtgatcatgga----------tgatgatgt---tctattggactgaat-cagGGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAG
                                                                                                   | | |  |||    ||||   ||| |    |  || ||||  ||   |          | ||    |   ||  |   |  ||||  || ||||| ||||| || ||||||||||| || |||||||||||||| || |||||| |||| ||||| |
gtatgtactttattgctgctacaagatgcttgtttcttaagcacaattggatgaagcataatttactgcattttaattgacaaaaatgaataatgagctggaagtataacagttacatcttttctgcacttctgttgtggacacaaaaactgttagttaatagcatgaatccgtgttatggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G153704_T03 (Zea mays), 3'ss of exon 3
---------------------------------------------------------------------------------------------------gtatgactaaatactacactgttttta---tcttggtgtgatcatgga----------tgatgatgt---tctattggactgaat-cagGGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAG-----
                                                                                                   | | |  |||    ||||   ||| |    |  || ||||  ||   |          | ||    |   ||  |   |  ||||  || ||||| ||||| || ||||||||||| || |||||||||||||| || |||||| |||| ||||| |     
gtatgtactttattgctgctacaagatgcttgtttcttaagcacaattggatgaagcataatttactgcattttaattgacaaaaatgaataatgagctggaagtataacagttacatcttttctgcacttctgttgtggacacaaaaactgttagttaatagcatgaatccgtgttatggaatgtagTGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATG

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G07780.1 (Glycine max), 3'ss of exon 3
--------------------gtatgactaaatactac-actgtttttatct---tggtgtgatcatggatgatgat----gttctattggactgaatcagGGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAG
                     |||   ||| | |||| ||| ||| | | |      | |  || ||  | |  |         |    |  ||  | |||||||| |||||||| |||||||| ||||||||||||||||| ||| | |||||||||||| | ||||
tgttcttttggcttcttgacatatatataactgctactactttttatttttaatcaatatcttcttgtttaagaactcgaacaatccctgtttggtttagGGTGGTAAATGGTGCCCTTGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTATACAAG

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 3
---------------------gtatgactaaatactacactgtttttatcttggtgtga----tcatggatgatgatgttctattg---gactgaatcagGGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAG
                      |   ||    |   |        ||||||  | || |    |  || |  |   | | |||||       ||   ||||||||| ||||||||||||||||| ||| | ||||||||||| || || |||||| ||||||| ||||
aatacagttaagtctttttgtatgcaacagggtctcatgtataacttatctatgggtaagatgtactgtaacagtgtatgctattttttatttgccacagGGTGGTGAATGGTGCTCTTGAATACCTTTCCAAGGATCTTGGAATTGCTGAAAATGCTGTTTTACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgtttttatcttggtgtgatcatggatgatgatgttctattggactgaatcagGGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAG
     ttttatctt  TA-rich tract