1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGGTAGGTTCATTCACTGGAGGTGCATTAGCTGACAAATTTGGACGAACAAGAACTTTTCAATTGGATGCTATCCCGCTTGCCATTGGAGCTTTCTTATGgtaaattttcaagcactaagccatacctattggtgagacgttaattgatttcttaacgcattggttctttttttattgattag
species | Arabidopsis thaliana |
transcript | AT5G16150.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTTTCAATTGGATGCTATCCCGCTTGTCCATTGGAGCTTTCTTATG TGCAACAGCTCAGAGTGTGCAGACTATGATTGTGGGACGTEST: gi|125254995|gb|EL269080.1|EL269080
genomic: CTTTTCAATTGGATGCTATCCCGCTTG-CCATTGGAGCTTTCTTATGgtaaattttc ... tattgattagTGCAACAGCTCAGAGTGTGCAGACTATGATTGTGGGACGT
EST: AGAACTTTTCAATTGGATGCTATCCCGCTTGCCATTGGAGCTTTCTTATG TGCAACAGCTCAGAGTGTGCAGACEST: gi|125276768|gb|EL290853.1|EL290853
genomic: AGAACTTTTCAATTGGATGCTATCCCGCTTGCCATTGGAGCTTTCTTATGgtaaattttc ... tattgattagTGCAACAGCTCAGAGTGTGCAGAC
EST: GATGCTATCCCGCTTGCCATTGGAGCTTTCTTATG TGCAACAGCTCAGAGTGTGCAGACTATGATTGTGGGACGTCTGCTCG
genomic: GATGCTATCCCGCTTGCCATTGGAGCTTTCTTATGgtaaattttc ... tattgattagTGCAACAGCTCAGAGTGTGCAGACTATGATTGTGGGACGTCTGCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTAGGTTCATTCACTGGAGGTGCATTAGCTGACAAATTTGGACGAACAAGAACTTTTCAATTGGATGCTATCCCGCTTGCCATTGGAGCTTTCTTATGgtaaattttcaagcactaagccatacctattggtgagacgttaattgatttcttaacgcattggttctttttttattgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT