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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGgtactctcaaggaacagatctcaacacttaaaatgagatcaatttttgacaagtcaaggaaatcaattttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G16150.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16150.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 8
GTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGgtactctcaaggaacagatctcaacacttaaaatgagatcaatttttgacaag--tcaaggaaatcaattttgcag------------------------------------------------------------------------
||||||||| |||||||||||||| ||| |||| ||  ||||||||||  | |||||||| ||||||||||| || ||  |||||||  |||||||    |     |    ||     ||| ||   |  ||    || |  |   |  |        ||| || |||||                                                                        
GTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAGgtttcttttgctaggttattcagtcacatatggtttgaatgtttctacatgggatttttatttttcatttctgcagtatattcaatccattttatctaggtcattagtttatcaatatagattctgagctaaacacatttctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164158900|gb|ES102495.1|ES102495
EST:     TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAG                         CAAGGAAAAGTCTCTGAAGCTGAAA
genomic: TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGgtactctcaa ... aattttgcagCAAGGAAAAGTCTCTGAAGCTGAAA
EST: gi|164112137|gb|ES099749.1|ES099749
EST:     TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAG                         CAAGGAAAAGTCTCTGAAGCT
genomic: TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGgtactctcaa ... aattttgcagCAAGGAAAAGTCTCTGAAGCT
EST: gi|116470693|gb|EG513285.1|EG513285
EST:     TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAG                         CAAGGAAAAGTCTCTGAAGCTGAAAAGGCGATCAAAACTTTGTATGGTAAA
genomic: TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGgtactctcaa ... aattttgcagCAAGGAAAAGTCTCTGAAGCTGAAAAGGCGATCAAAACTTTGTATGGTAAA
EST: gi|125163435|gb|EL190205.1|EL190205
EST:     AAGCCCAAGGTGGCTCGTTCAG                         CAAGGAAAAGTCTCTGAAGCTGAAAAGGCGATCAAAACTTTGTATGGTAAA
genomic: AAGCCCAAGGTGGCTCGTTCAGgtactctcaa ... aattttgcagCAAGGAAAAGTCTCTGAAGCTGAAAAGGCGATCAAAACTTTGTATGGTAAA