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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctcaaggaacagatctcaacacttaaaatgagatcaatttttgacaagtcaaggaaatcaattttgcagCAAGGAAAAGTCTCTGAAGCTGAAAAGGCGATCAAAACTTTGTATGGTAAAGAAAGAGTGGTTGAACTAGTTCGCGACTTATCAGCCTCTGGCCAAGGTT

Basic information

species Arabidopsis thaliana
transcript AT5G16150.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16150.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA13G07780.1 (Glycine max), 3'ss of exon 8
----------------------------gtactctcaaggaacagatctcaacacttaaaatgagatcaatttttgacaagtcaaggaaatcaattttgcagCAAGGAAAAGTCTCTGAAGCTGAAAAGGCGATCAAAACTTTGTATGGTAAAGAAAGAGTGGTTGAACTAGTTCGCGACTTATCAGCCTCTGGCCAAGGTT
                             ||        || |  |   ||| | ||  | ||       | |  || || |  | | | |  ||||| |||||||| ||| ||||||||||||||||||| || |||||  | |||||  |||||||||| | || | |  |    |||||| || |  |  | |||||||
cttatcatgcatagatgatgtgcctcgtatatctgttgagatcttaatgcaaaatttttattgtaggttttctgagaaaatttcatgtatt--attttacagCAAGGCAAAATCTCTGAAGCTGAAAAGGCTATTAAAACACTCTATGGACAAGAAAGAGTTGCTGCAGTTATGAATGACTTAACAACAGCAAGTCAAGGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164158900|gb|ES102495.1|ES102495
EST:     TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAG                         CAAGGAAAAGTCTCTGAAGCTGAAA
genomic: TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGgtactctcaa ... aattttgcagCAAGGAAAAGTCTCTGAAGCTGAAA
EST: gi|164112137|gb|ES099749.1|ES099749
EST:     TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAG                         CAAGGAAAAGTCTCTGAAGCT
genomic: TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGgtactctcaa ... aattttgcagCAAGGAAAAGTCTCTGAAGCT
EST: gi|116470693|gb|EG513285.1|EG513285
EST:     TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAG                         CAAGGAAAAGTCTCTGAAGCTGAAAAGGCGATCAAAACTTTGTATGGTAAA
genomic: TGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGgtactctcaa ... aattttgcagCAAGGAAAAGTCTCTGAAGCTGAAAAGGCGATCAAAACTTTGTATGGTAAA
EST: gi|125163435|gb|EL190205.1|EL190205
EST:     AAGCCCAAGGTGGCTCGTTCAG                         CAAGGAAAAGTCTCTGAAGCTGAAAAGGCGATCAAAACTTTGTATGGTAAA
genomic: AAGCCCAAGGTGGCTCGTTCAGgtactctcaa ... aattttgcagCAAGGAAAAGTCTCTGAAGCTGAAAAGGCGATCAAAACTTTGTATGGTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaacacttaaaatgagatcaatttttgacaagtcaaggaaatcaattttgcagCAAGGAAAAGTCTCTGAAGCTGAAAAGGCGATCAAAACTTTGTATGGTAAAGAAAGAGTGGTTGAACTAGTTCGCGACTTATCAGCCTCTGGCCAAGGTT
                        ttttgac  putative branch site (score: 3)
                                        aaatcaatttt  TA-rich tract