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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagattgaaaaaacttctcttacaaagaaaagttcaatctgtatggcttctttggttctgcctgaaacttgtttgtgttaattaatctcattaagacaatgatggttttatttatcttgaatgttctagGATGATGGGAATGGTACGGAGCGTATCGAAGCTTCCGACTTATAGAAGAAGGTTCAGACAAGTGGTTAAGGCTCTAATTACTTATTATTCAGAGAAACAA

Basic information

species Arabidopsis thaliana
transcript AT4G37030.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116405858|gb|EG448450.1|EG448450
EST:     CCGCCTCAAGAAAACCTTCGAACTGCTCAAATCCAAGGAATCAGCAGAAG                         GATGATGGGAATGGTACGGAGCGTATCGAAGCTTCCGACTTATAGAAGAAG
genomic: CCGCCTCAAGAAAACCTTCGAACTGCTCAAATCCAAGGAATCAGCAGAAGgtaaagattg ... aatgttctagGATGATGGGAATGGTACGGAGCGTATCGAAGCTTCCGACTTATAGAAGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttaattaatctcattaagacaatgatggttttatttatcttgaatgttctagGATGATGGGAATGGTACGGAGCGTATCGAAGCTTCCGACTTATAGAAGAAGGTTCAGACAAGTGGTTAAGGCTCTAATTACTTATTATTCAGAGAAACAA
     aattaat  putative branch site (score: 3)
                               ttttatttatcttgaa  TA-rich tract