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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtaaaaacttttgtcctaaactattccaaaagagtttttgctgattcttgtgtctcgtcttgcagGTTGATTCATGTTCCAGGATGCATCATTGTTGGGATTCTAGGATTAGTCATTGATATCCCTCTTTTCACTGCAATCGCGGTTATTAAAAGCCCTTACCTT

Basic information

species Arabidopsis thaliana
transcript AT4G37030.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116405860|gb|EG448452.1|EG448452
EST:     GCGAATCCCCGGTTTCAGATGAGCTTCAAACTCTTAG                         GTTGATTCATGTTCCAGGATGCATCATTGTTGGGATTCTAGGATTAGTCAT
genomic: GCGAATCCCCGGTTTCAGATGAGCTTCAAACTCTTAGgtaaagtaaa ... cgtcttgcagGTTGATTCATGTTCCAGGATGCATCATTGTTGGGATTCTAGGATTAGTCAT
EST: gi|116405845|gb|EG448437.1|EG448437
EST:     TTAAAGGAGTTACGCGAATCCCCGGTTTCAGATGAGCTTCAAACTCTTAG                         GTTGATTCATGTTCCAGGATGCATCATTGTTGGGATTCTAGGATTAGTCAT
genomic: TTAAAGGAGTTACGCGAATCCCCGGTTTCAGATGAGCTTCAAACTCTTAGgtaaagtaaa ... cgtcttgcagGTTGATTCATGTTCCAGGATGCATCATTGTTGGGATTCTAGGATTAGTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcctaaactattccaaaagagtttttgctgattcttgtgtctcgtcttgcagGTTGATTCATGTTCCAGGATGCATCATTGTTGGGATTCTAGGATTAGTCATTGATATCCCTCTTTTCACTGCAATCGCGGTTATTAAAAGCCCTTACCTT
                                          tctcgtctt  CT-rich tract
      taaactatt  TA-rich tract