1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atccatttcgaatttgtgtttaatctttggactatagcacacagtgaaaaacacgaaatataattgttctcatatggttaagttttgaatggaattgcagTATATGTGTGATGCGTTACCTTTTGGAGGAGTGGGAGAAAGTGGAATAGGGAGGTATCACGGGAAATACTCATTTGATTGTTTCAGTCACGAGAAAGCAA
species | Arabidopsis thaliana |
transcript | AT4G36250.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTCAGAAACATCCTCAGGAAGTGTTACCTTCAATGACGTCATGATCCAG TATATGTGTGATGCGTTACCTTTTGGAGGEST: gi|124952558|gb|EL027818.1|EL027818
genomic: TGTCAGAAACATCCTCAGGAAGTGTTACCTTCAATGACGTCATGATCCAGgtatatatat ... ggaattgcagTATATGTGTGATGCGTTACCTTTTGGAGG
EST: TGTCAGAAACATCCTCAGGAAGTGTTACCTTCAATGACGTCATGATCCAG TAATATGTGTGATGCGTTACCTTTTGGAGGEST: gi|86088383|gb|DR384142.1|DR384142
genomic: TGTCAGAAACATCCTCAGGAAGTGTTACCTTCAATGACGTCATGATCCAGgtatatatat ... ggaattgcagTA-TATGTGTGATGCGTTACCTTTTGGAGG
EST: TGTCAGAAACATCCTCAGGAAGTGTTACCTTCAATGACGTCATGATCCAG TATATGTGTGATGCGTTACCTTTTGGAGGAGTGGGAGAAAGTGGAATAGGGEST: gi|125234314|gb|EL248399.1|EL248399
genomic: TGTCAGAAACATCCTCAGGAAGTGTTACCTTCAATGACGTCATGATCCAGgtatatatat ... ggaattgcagTATATGTGTGATGCGTTACCTTTTGGAGGAGTGGGAGAAAGTGGAATAGGG
EST: TGACGTCATGATCCAG TATATGTGTGATGCGTTACCTTTTGGAGGAGTGGGAGAAAGTGGAATAGGG
genomic: TGACGTCATGATCCAGgtatatatat ... ggaattgcagTATATGTGTGATGCGTTACCTTTTGGAGGAGTGGGAGAAAGTGGAATAGGG
gaaaaacacgaaatataattgttctcatatggttaagttttgaatggaattgcagTATATGTGTGATGCGTTACCTTTTGGAGGAGTGGGAGAAAGTGGAATAGGGAGGTATCACGGGAAATACTCATTTGATTGTTTCAGTCACGAGAAAGCAA
aaatataattgttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccatttcgaatttgtgtttaatctttggactatagcacacagtgaaaaacacgaaatataattgttctcatatggttaagttttgaatggaattgcagTATATGTGTGATGCGTTACCTTTTGGAGGAGTGGGAGAAAGTGGAATAGGGAGGTATCACGGGAAATACTCATTTGATTGTTTCAGTCACGAGAAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - -cacacag
- - - - - - - - - - - - - - - - - - - - - - -gaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttttga