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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatatttaaagcatacagtatatacattagtaaacaatcaactaatcgttgttgattttgtctatttcctcctatgtgatgaagGTACGTGACATCCAAGAAAGCATAGGGATCATTAATACAAAACCGAAGCCACTTGCCATTTATGCATTCACAAATGACGAGAACCTTAAAACTAGAATTT

Basic information

species Arabidopsis thaliana
transcript AT4G36250.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125295330|gb|EL309415.1|EL309415
EST:     GGTCCAATTCTCCCGATTATCACG                         GTACGTGACATCCAAGAAAGCATAGGGATCATTAATACAAAACCGAAGCCA
genomic: GGTCCAATTCTCCCGATTATCACGgtaagcatat ... tgtgatgaagGTACGTGACATCCAAGAAAGCATAGGGATCATTAATACAAAACCGAAGCCA
EST: gi|124835078|gb|EH919517.1|EH919517
EST:     GAGATCTTTGGTCCAATTCTCCCGATTATCACG                         GTACGTGACATCCAAGAAAGCATAGGGATCATTAATACAAAACCG
genomic: GAGATCTTTGGTCCAATTCTCCCGATTATCACGgtaagcatat ... tgtgatgaagGTACGTGACATCCAAGAAAGCATAGGGATCATTAATACAAAACCG
EST: gi|86088383|gb|DR384142.1|DR384142
EST:     CTGAGATCATGAATGAAGAGATCTTTGGTCCAATTCTCCCGATTATCACG                         GTACGTGACATCCAAGAAAGCATAGGGATCATTAATACAAAACCGAAGCCA
genomic: CTGAGATCATGAATGAAGAGATCTTTGGTCCAATTCTCCCGATTATCACGgtaagcatat ... tgtgatgaagGTACGTGACATCCAAGAAAGCATAGGGATCATTAATACAAAACCGAAGCCA
EST: gi|125298316|gb|EL312401.1|EL312401
EST:     CTGAGATCATGAATGAAGAGATCTTTGGTCCAATTCTCCCGATTATCACG                         GTACGTGACATCCAAG
genomic: CTGAGATCATGAATGAAGAGATCTTTGGTCCAATTCTCCCGATTATCACGgtaagcatat ... tgtgatgaagGTACGTGACATCCAAG
EST: gi|125040769|gb|EL113038.1|EL113038
EST:     GATCATGAATGAAGAGATCTTTGGTCCAATTCTCCCGATTATCACG                         GTACGTGACATCCAAGAAAGCATAGGGATCATTAATACAAAACCGAAGCCA
genomic: GATCATGAATGAAGAGATCTTTGGTCCAATTCTCCCGATTATCACGgtaagcatat ... tgtgatgaagGTACGTGACATCCAAGAAAGCATAGGGATCATTAATACAAAACCGAAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaacaatcaactaatcgttgttgattttgtctatttcctcctatgtgatgaagGTACGTGACATCCAAGAAAGCATAGGGATCATTAATACAAAACCGAAGCCACTTGCCATTTATGCATTCACAAATGACGAGAACCTTAAAACTAGAATTT
                               tctatttcctcctat  CT-rich tract
                      ttgatttt  TA-rich tract