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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGCTTATCTCGATACTAAAGCCATCAAAGTTATCGAAGGAGGACCTGATGTCGCTACTATCCTCTTGCAGCATCAATGGGACAAGATCTTCTTCACCGgtatcaatccattcactcgcgatgacttgcttgtagcggaatacgcgtgattgatgttgttgtttgcttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G36250.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125042919|gb|EL115188.1|EL115188
EST:     TGTCGCTACTATCCTCTTGCAGCATCAATGGGACAAGATCTTCTTCACCG                         GGAGTCCCAAGATTGGAAGGATCATAATGG
genomic: TGTCGCTACTATCCTCTTGCAGCATCAATGGGACAAGATCTTCTTCACCGgtatcaatcc ... ttgcttgtagGGAGTCCCAAGATTGGAAGGATCATAATGG
EST: gi|125098875|gb|EL154871.1|EL154871
EST:     TGTCGCTACTATCCTCTTGCAGCATCAATGGGACAAGATCTTCTTCACCG                         GGAGTCCCAAGATTGGAAGGATCATAATGGCTGCAGCAG
genomic: TGTCGCTACTATCCTCTTGCAGCATCAATGGGACAAGATCTTCTTCACCGgtatcaatcc ... ttgcttgtagGGAGTCCCAAGATTGGAAGGATCATAATGGCTGCAGCAG