1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCATTTGGCTACTATCCCCATTACTGGAACTGGTATCAACCCAGCTAGAAGCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgtttagttattatctggattaggtattcactaatcattcatgacttcatgtcctaatgttggttctgtgttggttttggttttgcag
species | Arabidopsis thaliana |
transcript | AT4G35100.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|124899974|gb|EH974592.1|EH974592
genomic: CTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: AACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|164068105|gb|ES150878.1|ES150878
genomic: AACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: CTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|164209930|gb|ES152521.1|ES152521
genomic: CTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTTTGGTGCTGCTATTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGEST: gi|164193856|gb|ES080645.1|ES080645
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTG
EST: TATCTACAACAACGAGAAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCEST: gi|116411606|gb|EG454198.1|EG454198
genomic: TATCTACAACAACGAG-AAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|124884706|gb|EH963608.1|EH963608
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCAEST: gi|125246104|gb|EL260189.1|EL260189
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCA
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGEST: gi|164195695|gb|ES005266.1|ES005266
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAG
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCEST: gi|86031961|gb|DR327714.1|DR327714
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|86031968|gb|DR327721.1|DR327721
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTTTGGTGCTGCTGTTATCTA-AACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|124835866|gb|EH920305.1|EH920305
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGEST: gi|124993331|gb|EL065600.1|EL065600
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGG
EST: CTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGACGTGGGATGACCAA TGGATCTTTTGGGTTGEST: gi|116409602|gb|EG452194.1|EG452194
genomic: CTTTGGTGCTGCTGTTATCTACAACAACGAGAAGG-CGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTG
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|164214985|gb|ES049980.1|ES049980
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGEST: gi|86031959|gb|DR327712.1|DR327712
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAG
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|164234237|gb|EL982708.1|EL982708
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCEST: gi|125052157|gb|EL124045.1|EL124045
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGC
EST: CTTTGGTGCTGCTGTTATCTAACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGEST: gi|124835994|gb|EH920433.1|EH920433
genomic: CTTTGGTGCTGCTGTTATCT-ACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGG
EST: GCTTTGGTGCCGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCAEST: gi|124758588|gb|EH848718.1|EH848718
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCA
EST: CGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|86031969|gb|DR327722.1|DR327722
genomic: CGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|125180685|gb|EL197484.1|EL197484
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: AGGCGTGGGACGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|125159132|gb|EL187396.1|EL187396
genomic: AGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: CAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTAGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGEST: gi|125244798|gb|EL258883.1|EL258883
genomic: CAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTT-GGTCCGTTCTTGGGAGCACTAGCTGCAGCAG
EST: TGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|124919888|gb|EH993626.1|EH993626
genomic: TGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGEST: gi|124708346|gb|EH799748.1|EH799748
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCG
EST: CTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTEST: gi|124991668|gb|EL063937.1|EL063937
genomic: CTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTT
EST: TGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA NGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|163993285|gb|ES071222.1|ES071222
genomic: TGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGEST: gi|86031966|gb|DR327719.1|DR327719
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGG
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|124994902|gb|EL067171.1|EL067171
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|125212592|gb|EL227546.1|EL227546
genomic: GCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTEST: gi|124748325|gb|EH838455.1|EH838455
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGT
EST: GGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|125268820|gb|EL282905.1|EL282905
genomic: GGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: CTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGACTGCAGCAGCTTAEST: gi|116409600|gb|EG452192.1|EG452192
genomic: CTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAG-CTGCAGCAGCTTA
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAEST: gi|124985225|gb|EL057828.1|EL057828
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTA
EST: TTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACEST: gi|164111391|gb|ES024814.1|ES024814
genomic: TTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCEST: gi|124807361|gb|EH893765.1|EH893765
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGC
EST: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA TGGATCTTTTGGGTTGGTCCCGTTCTTGGGAGCACTAGCTGCAGCAGEST: gi|124722386|gb|EH813788.1|EH813788
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCC-GTTCTTGGGAGCACTAGCTGCAGCAG
EST: GGGATGACCAA TGGATTCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTA
genomic: GGGATGACCAAgtaagtgttt ... ggttttgcagTGGA-TCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATTTGGCTACTATCCCCATTACTGGAACTGGTATCAACCCAGCTAGAAGCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgtttagttattatctggattaggtattcactaatcattcatgacttcatgtcctaatgttggttctgtgttggttttggttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT