Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtttagttattatctggattaggtattcactaatcattcatgacttcatgtcctaatgttggttctgtgttggttttggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACCACCAATACATATTGAGAGCTTCAGCAATTAAGGCCTTGGGCTCGTTCC

Basic information

species Arabidopsis thaliana
transcript AT4G35100.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125270999|gb|EL285084.1|EL285084
EST:     CTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: CTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|124899974|gb|EH974592.1|EH974592
EST:     AACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: AACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|164068105|gb|ES150878.1|ES150878
EST:     CTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: CTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|164209930|gb|ES152521.1|ES152521
EST:     GCTTTGGTGCTGCTATTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTG
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTG
EST: gi|164193856|gb|ES080645.1|ES080645
EST:     TATCTACAACAACGAGAAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGC
genomic: TATCTACAACAACGAG-AAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGC
EST: gi|116411606|gb|EG454198.1|EG454198
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|124884706|gb|EH963608.1|EH963608
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCA
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCA
EST: gi|125246104|gb|EL260189.1|EL260189
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAG
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAG
EST: gi|164195695|gb|ES005266.1|ES005266
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCC
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCC
EST: gi|86031961|gb|DR327714.1|DR327714
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|86031968|gb|DR327721.1|DR327721
EST:     GCTTTGGTGCTGCTGTTATCTA-AACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|124835866|gb|EH920305.1|EH920305
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGG
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGG
EST: gi|124993331|gb|EL065600.1|EL065600
EST:     CTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGACGTGGGATGACCAA                         TGGATCTTTTGGGTTG
genomic: CTTTGGTGCTGCTGTTATCTACAACAACGAGAAGG-CGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTG
EST: gi|116409602|gb|EG452194.1|EG452194
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|164214985|gb|ES049980.1|ES049980
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAG
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAG
EST: gi|86031959|gb|DR327712.1|DR327712
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|164234237|gb|EL982708.1|EL982708
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGC
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGC
EST: gi|125052157|gb|EL124045.1|EL124045
EST:     CTTTGGTGCTGCTGTTATCTAACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGG
genomic: CTTTGGTGCTGCTGTTATCT-ACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGG
EST: gi|124835994|gb|EH920433.1|EH920433
EST:     GCTTTGGTGCCGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCA
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCA
EST: gi|124758588|gb|EH848718.1|EH848718
EST:     CGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: CGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|86031969|gb|DR327722.1|DR327722
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|125180685|gb|EL197484.1|EL197484
EST:     AGGCGTGGGACGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: AGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|125159132|gb|EL187396.1|EL187396
EST:     CAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTAGGTCCGTTCTTGGGAGCACTAGCTGCAGCAG
genomic: CAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTT-GGTCCGTTCTTGGGAGCACTAGCTGCAGCAG
EST: gi|125244798|gb|EL258883.1|EL258883
EST:     TGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: TGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|124919888|gb|EH993626.1|EH993626
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCG
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCG
EST: gi|124708346|gb|EH799748.1|EH799748
EST:     CTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTT
genomic: CTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTT
EST: gi|124991668|gb|EL063937.1|EL063937
EST:     TGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         NGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: TGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|163993285|gb|ES071222.1|ES071222
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGG
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGG
EST: gi|86031966|gb|DR327719.1|DR327719
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|124994902|gb|EL067171.1|EL067171
EST:     GCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: GCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|125212592|gb|EL227546.1|EL227546
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGT
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGT
EST: gi|124748325|gb|EH838455.1|EH838455
EST:     GGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: GGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|125268820|gb|EL282905.1|EL282905
EST:     CTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGACTGCAGCAGCTTA
genomic: CTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAG-CTGCAGCAGCTTA
EST: gi|116409600|gb|EG452192.1|EG452192
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTA
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTA
EST: gi|124985225|gb|EL057828.1|EL057828
EST:     TTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
genomic: TTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTAC
EST: gi|164111391|gb|ES024814.1|ES024814
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGC
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGC
EST: gi|124807361|gb|EH893765.1|EH893765
EST:     GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAA                         TGGATCTTTTGGGTTGGTCCCGTTCTTGGGAGCACTAGCTGCAGCAG
genomic: GCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAAgtaagtgttt ... ggttttgcagTGGATCTTTTGGGTTGGTCC-GTTCTTGGGAGCACTAGCTGCAGCAG
EST: gi|124722386|gb|EH813788.1|EH813788
EST:     GGGATGACCAA                         TGGATTCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTA
genomic: GGGATGACCAAgtaagtgttt ... ggttttgcagTGGA-TCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcattcatgacttcatgtcctaatgttggttctgtgttggttttggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACCACCAATACATATTGAGAGCTTCAGCAATTAAGGCCTTGGGCTCGTTCC
                  tcctaat  putative branch site (score: 2)
                     taatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgtttagttattatctggattaggtattcactaatcattcatgacttcatgtcctaatgttggttctgtgttggttttggttttgcagTGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACCACCAATACATATTGAGAGCTTCAGCAATTAAGGCCTTGGGCTCGTTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT