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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtagttaacatgcttttaatagagataacttccttcgcaaaatctatattctgataagttgaagtctcagGTTTATGGTGAGGATTGGAGTGATGTTGATTCTTGCTTCTCTGAGTATGTTTCTTGTTAGTACAACCTTCATGGCTTTACCAATTCTAGTGGGAAGGGCG

Basic information

species Arabidopsis thaliana
transcript AT4G32670.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116426642|gb|EG469234.1|EG469234
EST:     CAAAGCGATACCACCTGTGAAAAGGATACAAACGAGCAAAGAGATAAAAG                         GTTTATGGTGAGGATTGGAGTGATGTTGATTCTTGCTTCTCTGAGTATGTT
genomic: CAAAGCGATACCACCTGTGAAAAGGATACAAACGAGCAAAGAGATAAAAGgtagtagtta ... gaagtctcagGTTTATGGTGAGGATTGGAGTGATGTTGATTCTTGCTTCTCTGAGTATGTT
EST: gi|116426631|gb|EG469223.1|EG469223
EST:     CAAAGCGATACCACCTGTGAAAAGGATACAAACGAGCAAAGAGATAAAAG                         GTTTATGGTGAGGATTGGAGTGATGTTGATTCTTGCTTCTCTGAGTATGTT
genomic: CAAAGCGATACCACCTGTGAAAAGGATACAAACGAGCAAAGAGATAAAAGgtagtagtta ... gaagtctcagGTTTATGGTGAGGATTGGAGTGATGTTGATTCTTGCTTCTCTGAGTATGTT
EST: gi|116426640|gb|EG469232.1|EG469232
EST:     CAAAGCGATACCACCTGTGAAAAGGATACAAACGAGCAAAGAGATAAAAG                         GTTTATGGTGAGGATTGGAGTGATGTTGATTCCTGCTTCTCTGAGTATGTT
genomic: CAAAGCGATACCACCTGTGAAAAGGATACAAACGAGCAAAGAGATAAAAGgtagtagtta ... gaagtctcagGTTTATGGTGAGGATTGGAGTGATGTTGATTCTTGCTTCTCTGAGTATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatagagataacttccttcgcaaaatctatattctgataagttgaagtctcagGTTTATGGTGAGGATTGGAGTGATGTTGATTCTTGCTTCTCTGAGTATGTTTCTTGTTAGTACAACCTTCATGGCTTTACCAATTCTAGTGGGAAGGGCG
                                 ttctgat  putative branch site (score: 3)
                       aaaatctatattct  TA-rich tract