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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatttgaactttttgttcagttctcacgcatcatctagtttactccactttctcttctttcttttggcagATAGTTCAGAAACGAGCCTTATGGTATCTGCTAGATGTTGCAGAACCAAACTACAAAGTCACCAAACTGCATCTTGGTCCCATTCTCTTGGCGTTTGCTT

Basic information

species Arabidopsis thaliana
transcript AT4G32670.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116426651|gb|EG469243.1|EG469243
EST:     GAACGTTGTACTTGGTATCTGCTTTAAGTTGCATGGAGCTTATCCAAAAG                         ATAGTTCAGAAACGAGCCTTATGGTATCTGCTAGATGTTGCAGAACCAAAC
genomic: GAACGTTGTACTTGGTATCTGCTTTAAGTTGCATGGAGCTTATCCAAAAGgtaaaatttg ... cttttggcagATAGTTCAGAAACGAGCCTTATGGTATCTGCTAGATGTTGCAGAACCAAAC
EST: gi|116426653|gb|EG469245.1|EG469245
EST:     GAACGTTGTACTTGGTATCTGCTTTAAGTTGCATGGAGCTTATCCAAAAG                         ATAGTTCAGAAACGAGCCTTATGGTATCTGCTAGATGTTGCAGAACCAAAC
genomic: GAACGTTGTACTTGGTATCTGCTTTAAGTTGCATGGAGCTTATCCAAAAGgtaaaatttg ... cttttggcagATAGTTCAGAAACGAGCCTTATGGTATCTGCTAGATGTTGCAGAACCAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagttctcacgcatcatctagtttactccactttctcttctttcttttggcagATAGTTCAGAAACGAGCCTTATGGTATCTGCTAGATGTTGCAGAACCAAACTACAAAGTCACCAAACTGCATCTTGGTCCCATTCTCTTGGCGTTTGCTT
     ttctcac  putative branch site (score: 2)
               tcatctagtttactcc  putative PPT
                                          tttctttt  TA-rich tract