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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctagaactgaaataggttaaggttgggtttgggtacactctctgtagttaaagttttgaaagaaaaagaaaaatcttcaagagtttgtactttttgacagtttggtatttgattttaaataacagAGGAGTGCTGCAAATGAGACACATTTCAGGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATAACCGGATTCATC

Basic information

species Arabidopsis thaliana
transcript AT4G32660.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32660.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 3'ss of exon 6
gtatctagaactgaaataggttaaggttgggtttgggtacactctctgtagttaaagttttgaaagaaaaagaaaaatcttcaagagtttgtactttttgacagtttggtatttgattttaaataacagAGGAGTGCTGCAAATGAGACACATTTCAGGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATAACCGGATTCATC
            | |||  || ||  |  | ||||     |   ||||   ||       |||||  |         | ||  ||   || |  |   |||    ||||     | || ||     |||| || | |   | ||||||  ||||||| ||||||||||||||| || ||||| || ||||| |||||||| ||||| |  | |||||| | |   ||| 
------------gtaat--gtcaa--tcagttttgtagtgatcatctgctatt------ctgaaactaggcatgcggtatt--agcagttatgttgaatgatcccttgg-----ggttgta-----cagAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTGCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATA

upper sequence: AT4G32660.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA06G08480.2 (Glycine max), 3'ss of exon 6
gtatctagaactgaaataggttaaggttgggtttgggtacactctctgtagttaaagtttt--gaaagaaaaagaaaaatcttca-agagtttgtactttttgacagtttggtatttgattttaaataacagAGGAGTGCTGCAAATGAGACACATTTCAGGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATAACCGGATTCATC
                                               ||| |||   ||||  ||   ||| | || ||| ||   ||| |  ||  |  |  |      |||| ||  |        |||||| | | |  || |||| |  || ||||||||||| || ||||| || || ||||| |||||||||||||| |||||||  | |||||| | || |||| 
-----------------------------------------------gtatttattatttttggatccaaacataataatgtttgtagactcagttataatatatttaagggtaattattggattggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATA

upper sequence: AT4G32660.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 3'ss of exon 7
gtatctagaactgaaataggttaaggttgggtttgggtacactctctgtagttaaagttttgaaagaaaaagaaaaatcttcaagagtttgtactttt-tgacagtttggtatttgattttaaata-acagAGGAGTGCTGCAAATGAGACACATTTCAGGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATAACCGGATTCATC
                            |  |||||     |  | |  | ||  |   |      |    | |     ||   |  |   | | ||| | | | ||   ||  || ||  ||    |||||||  | || |  |||| || || ||||||||||| |||||||| || || ||||| |||||||||||||| |||||||  | |||||| | ||  ||| 
----------------------------gtatttgg-----ccttttacaattggaaaatcattccattttgga-----tttgggtatagatgcatttataatatttaaataaatgcttggaatggtacagAGGTTTTCTTCCGATGAAACTCACTTCAGGTGCTTGCCAAAGTCGAGTGCAATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAACCATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124992155|gb|EL064424.1|EL064424
EST:     GTCTTCTGAAAATGTAAAGCTTCCTGACAATAAG                         AGGAGTGCTGCAAATGAGACACATTTCAGGTG
genomic: GTCTTCTGAAAATGTAAAGCTTCCTGACAATAAGgtatctagaa ... taaataacagAGGAGTGCTGCAAATGAGACACATTTCAGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatcttcaagagtttgtactttttgacagtttggtatttgattttaaataacagAGGAGTGCTGCAAATGAGACACATTTCAGGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATAACCGGATTCATC
                              tttggtatttgatttt  TA-rich tract