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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgaattgttcctatctgctgctattttatacaattatcgtacctagcacgtcacctttatgtcccggttcagcagctgtagttcctacctaatgcctctctgttcttaacataatcttccttgtctacagATATGCACGAGTTACAGTTAGTTCACACCGACCTCAAGCCTGAGAACATTCTGTTGGTGTCTTCTGAAAATGTAAAGCTTCCTGACAATAAG

Basic information

species Arabidopsis thaliana
transcript AT4G32660.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116384701|gb|EG427293.1|EG427293
EST:     TCTGGCCCTTGTTCGGGATTTTGGATGCCAGCTTTTGGAATCTGTAGCAT                         ATATGCACGAGTTACAGTTAGTTCACACCAACCTCAAGCCTGAGAACATTC
genomic: TCTGGCCCTTGTTCGGGATTTTGGATGCCAGCTTTTGGAATCTGTAGCATgtctgtgaat ... ttgtctacagATATGCACGAGTTACAGTTAGTTCACACCGACCTCAAGCCTGAGAACATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtagttcctacctaatgcctctctgttcttaacataatcttccttgtctacagATATGCACGAGTTACAGTTAGTTCACACCGACCTCAAGCCTGAGAACATTCTGTTGGTGTCTTCTGAAAATGTAAAGCTTCCTGACAATAAG
                            tcttaac  putative branch site (score: 2)
                                       tcttccttgtctac  putative PPT
                              ttaacataat  TA-rich tract