Sequence
atgc intronic sequence ATGC exonic sequencegttagctgtcaagtggcatggtgtgttcgagataaaaaaaatgtttatgtgaatcaaatcgtgccatttcagtgaacttgctggtgttgtagGCACATTTGGTCGGGTTTTGGAATGTTGGGATCGTGATACAAAAGAATATGTGGCAATAAAGATAATTCGAAGCATTAAGAAATACCGGGATGCAGCAAT
Basic information
species | Arabidopsis thaliana |
transcript | AT4G32660.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G32660.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G094039_T03 (Zea mays), 3'ss of exon 3
-gttagctgtcaagtggcatggtgtgttcgaga-taaaaaaaatgtttat-gtgaatcaaatcgtgccatttcagtgaacttgctggtgttgtagGCACATTTGGTCGGGTTTTGGAATGTTGGGATCGTGATACAAAAGAATATGTGGCAATAAAGATAATTCGAAGCATTAAGAAATACCGGGATGCAGCAAT
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gtttgggttttctgcaatctgtcgtctcctcttctgctgggtatctccgttattattctaatgaagagggct--acgagttggat--tttcgtagGTACATTTGGGCGTGTTTTGGAATGCTGGGACCGTGAAACACATGAATATGTTGCCATAAAAGTTGTTCGCAGTATCCGCAAGTACCGTGATGCTGCAAT
upper sequence: AT4G32660.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA06G08480.1 (Glycine max), 3'ss of exon 3
gttagctgtcaagtggcatggtgtgttcgagataaaaaaaatgtttatgtgaatcaaatcgtgccatttcagtgaacttgctggtgttgtagGCACATTTGGTCGGGTTTTGGAATGTTGGGATCGTGATACAAAAGAATATGTGGCAATAAAGATAATTCGAAGCATTAAGAAATACCGGGATGCAGCAAT
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gttagcggtcaagtgtcctc-tgaatacaagattttaa---tttttttgtcactgtgcttgtgtcatt-cagcata-ttgctagtgctgtagGCACATTTGGTCGGGTTTTGGAATGTTGGGACCGTCAAACCAGAGAATATGTGGCTATCAAGGTAGTTAGAAGCATACGGAAATATCGGGATGCAGCAAT
upper sequence: AT4G32660.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 3'ss of exon 3
gttagctgtcaagtggcatggtgtgttcgagataaaaaaaatgtttatgtgaatcaaatcgtgccatttcagtgaacttgctggtgttgtagGCACATTTGGTCGGGTTTTGGAATGTTGGGATCGTGATACAAAAGAATATGTGGCAATAAAGATAATTCGAAGCATTAAGAAATACCGGGATGCAGCAAT
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gttagctgtcaagtgctctgctgtctgcaagatctta----tatttttgtgattctgcttctatgatctcagcaaa-ttgctagtactgtagGCACTTTTGGCCGGGTTTTGGAATGTTGGGATCGTGATACACGGGAATATGTTGCAATCAAGGTAGTTCGAAGCATAAGCAAGTACCGTGATGCAGCAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116384701|gb|EG427293.1|EG427293EST: ATAAAATACTTAGCAAGATGGGTGAAG GCACATTTGGTCGGGTTTTGGAATGTTGGGATCGTGATACAAAAGAATATG
genomic: ATAAAATACTTAGCAAGATGGGTGAAGgttagctgtc ... ggtgttgtagGCACATTTGGTCGGGTTTTGGAATGTTGGGATCGTGATACAAAAGAATATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaatgtttatgtgaatcaaatcgtgccatttcagtgaacttgctggtgttgtagGCACATTTGGTCGGGTTTTGGAATGTTGGGATCGTGATACAAAAGAATATGTGGCAATAAAGATAATTCGAAGCATTAAGAAATACCGGGATGCAGCAAT
aatcaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gttagctgtcaagtggcatggtgtgttcgagataaaaaaaatgtttatgtgaatcaaatcgtgccatttcagtgaacttgctggtgttgtagGCACATTTGGTCGGGTTTTGGAATGTTGGGATCGTGATACAAAAGAATATGTGGCAATAAAGATAATTCGAAGCATTAAGAAATACCGGGATGCAGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA