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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGGAGAGTTATGCAGAGAAGTATTTTAACCGTCCCGATGTTCAGAGAGCCATGCACGCTAATGTTACTGGAATTCGCTATAAATGGACAGCTTGCAGgtaaacagttcgcttcaccacctaatgatgactatgtaatgacactttgcatataactgatcctgaaagaaatggtttcttgtttgggttgaggcag

Basic information

species Arabidopsis thaliana
transcript AT4G30610.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30610.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv11s0037g00320.t01 (Vitis vinifera), 5'ss of exon 6
GTACGGAGAGTTATGCAGAGAAGTATTTTAACCGTCCCGATGTTCAGAGAGCCATGCACGCTAATGTTACTGGAATTCGCTATAAATGGACAGCTTGCAGgtaa-----acagttcgcttc-accacctaatgatgactatgta-atgacactttgc---atataac-tgatcctgaaagaaa---tggtttcttgtttgggttgaggcag
|||| |||| |||||||||||| || | ||| || || ||||| ||||  |||||||| || |||  |||||||||||  || |||||||| ||||||||||       ||| ||   ||  | |   |     | |  || ||   || |  ||     |||| |  || || | |||||     ||||    | |||| |||| |||||
GTACTGAGAATTATGCAGAGAAATACTATAATCGACCTGATGTGCAGAAGGCCATGCATGCAAATTCTACTGGAATTCCTTACAAATGGACTGCTTGCAGgttgttttcacaatttaatttgatctttttgaatttatcatatacgagagatcttagcagatatgatgtgttcataaaagagggtttggtgatctttttgtgttg-ggcag