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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCGTCGATTGCTTATGGAGCTTCAGAGGAAATTGGACCGTTTCGTATCAACAAAACCGGTTCCAATCTCTATCTCAACAAGTTCGCTTGGAACAAAGgtgattacaaatttcattacaaacaagttcactttattctatgcttcatgtaaggaattattttgaggcttcaaaatttaaatttctcattattgaatgtgtactataacag

Basic information

species Arabidopsis thaliana
transcript AT4G30610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30610.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G36600.1 (Glycine max), 5'ss of exon 2
TGCTCGTCGATTGCTTATGGAGCTTCAGAGGAAATTGGACCGTTTCGTATCAACAAAACCGGTTCCAATCTCTATCTCAACAAGTTCGCTTGGAACAAAGgtgattacaaatttcattacaaacaagttcactttattctatgcttcatgtaaggaattattttgaggcttcaaaatttaaatttctcattattgaat-gtgtactataacag
||||| ||| | || || || || |||||||||||||| ||||||||||| |||||||| || ||   ||| ||||||||||| |  || ||||||| |||| ||   |  |||  |   ||      | |||||||| | |   | ||   |  | || |   | |  ||  |||| ||  |  | || |  | ||| || ||   |     
TGCTCATCGGTAGCATACGGGGCATCAGAGGAAATTGGGCCGTTTCGTATAAACAAAACTGGCTCTTCTCTATATCTCAACAAATATGCATGGAACAGAGgtaatactatgttttctcttaa------ttactttattttttaagttataagaatatttttagcgggagtt--aaatatatgtcacacaatgataaatagtataactt-----

upper sequence: AT4G30610.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA17G08090.1 (Glycine max), 5'ss of exon 4
TGCTCGTCGATTGCTTATGGAGCTTCAGAGGAAATTGGACCGTTTCGTATCAACAAAACCGGTTCCAATCTCTATCTCAACAAGTTCGCTTGGAACAAAGgtgattacaaatttcattacaaacaagttcactttattctatgcttcatgtaaggaat-tattttgaggcttcaaaatttaaatt-tctcattattgaatgtgtactataacag----------------------------------------
||||| ||  | || || || || |||||||||||||| ||||| ||||| |||||||| || ||   ||| ||||||||||| |  || |||||||||||| |    |  |||  |    |     || |  | |  | ||| |  ||   | || | | | || ||  |||  |||||  |   |    |||   |   |  |  || |||                                         
TGCTCATCAGTAGCATACGGGGCATCAGAGGAAATTGGGCCGTTCCGTATAAACAAAACGGGCTCTTCTCTATATCTCAACAAATATGCATGGAACAAAGgtaacactatgttttctctttattt--tttatgtaacacaatgataaatactatgactgtttattaagatttctcaattttcaccattatgttacccacctttcagaatgacaatatatgaaatcacaattttttttttcaaattggttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124956566|gb|EL031477.1|EL031477
EST:     CCGGTTACCAATCTCTATCTCAACAAGTTCGCTTGGAACAAAG                         ACGCAAACCTTCTGTTTCTTGAATCACCGGCCGGAGTTGGATATTCCTACA
genomic: CCGGTT-CCAATCTCTATCTCAACAAGTTCGCTTGGAACAAAGgtgattacaa ... actataacagACGCAAACCTTCTGTTTCTTGAATCACCGGCCGGAGTTGGATATTCCTACA