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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttttttgttttgacaaatttggttccgtttaaagattcaagaattgcctatttgctaaataattttaatggacattattattttgacagGGCATTATGTTCCTCAGCTTGCCAAAAAGATAAATGACTACAACAAAGCTTTCTCCAAACCAATCATTAATCTCAAAGGATTCTTG

Basic information

species Arabidopsis thaliana
transcript AT4G30610.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30610.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: PP1S146_101V6.1 (Physcomitrella patens), 3'ss of exon 4
gtacgttttttgttttgacaaatttggtt--ccgtttaaagattcaag--aattgcctatttgctaaat----aattttaatggacattattattttgacagGGCATTATGTTCCTCAGCTTGCCAAAAAGATAAATGACTACAACAAAGCTTTCTCCAAACCAATCATTAATCTCAAAGGATTCTTG
 |  |  ||   | || | ||||  | ||    || | |   ||| ||  ||  |   | ||  || ||    || || | | |||| |   || |   ||||||||||||||||||| |||||||||   ||    ||  |||||  ||| |   |   |   |  || || ||||  || | | ||
ctgtggcttccatgttaagaaatccgattgattgtgtgacagttcgagtaaacgggtaagtttttacattgacaaattaattcgacact--catctatgcagGGCATTATGTTCCTCAACTTGCCAAACTAATTGTGGAGCACAACTCAGCCTCACC---ATTGAAAATCAACCTCAGCGGTTACATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaagaattgcctatttgctaaataattttaatggacattattattttgacagGGCATTATGTTCCTCAGCTTGCCAAAAAGATAAATGACTACAACAAAGCTTTCTCCAAACCAATCATTAATCTCAAAGGATTCTTG
                                           ttatttt  CT-rich tract
              tatttgctaaataatt  TA-rich tract