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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatatgcatatttgaaagattccatttttcatttgttaaaagctctatgtttgttttgaaacaaaacataacaagaaatacttgcacacacagGGATGGAGGGATGAGAGGACTGTTCATGGGAATGGGTCCACGAGTGGCACGTGCAGGACCATCGGTAGGGATAGTGGTTTCCTTCTACGAAGTGGTCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G27940.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163973179|gb|ES111717.1|ES111717
EST:     GACAGACACTAATGGAGGTTTGGAG                         GGATGGAGGGATGAGAGGACTGTTCATGGGAATGGGTCCACGAGTGGCACG
genomic: GACAGACACTAATAGAGGTTTGGAGgtatgtatat ... gcacacacagGGATGGAGGGATGAGAGGACTGTTCATGGGAATGGGTCCACGAGTGGCACG
EST: gi|86085091|gb|DR380850.1|DR380850
EST:     GGTAGGGCATTGATGATGACGACACGACAGACACTAATAGAGGTTTGGAG                         GGATGGAGGGATGAGAGGACTGTTCATGGGAATGGGTCCACGAGTGGCACG
genomic: GGTAGGGCATTGATGATGACGACACGACAGACACTAATAGAGGTTTGGAGgtatgtatat ... gcacacacagGGATGGAGGGATGAGAGGACTGTTCATGGGAATGGGTCCACGAGTGGCACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagctctatgtttgttttgaaacaaaacataacaagaaatacttgcacacacagGGATGGAGGGATGAGAGGACTGTTCATGGGAATGGGTCCACGAGTGGCACGTGCAGGACCATCGGTAGGGATAGTGGTTTCCTTCTACGAAGTGGTCAAG
                           acataac  putative branch site (score: 3)
                        aaaacataa  TA-rich tract