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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACAACTATCGTGGTCTCTGGAGAGGCTTGGGTGCACAGCTTGCCCGTGATGTTCCATTCTCAGCAATCTGCTGGTCGACCCTCGAGCCAgtaagatctttaacatgtttaagcgttttacgatgcagaaggtttattttaaggcagttttgccaaatacagtaagtgaattgctttgaccttcccttatgatacag

Basic information

species Arabidopsis thaliana
transcript AT4G27940.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G27940.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv16s0050g02360.t01 (Vitis vinifera), 5'ss of exon 8
TGCACAACTATCGTGGTCTCTGGAGAGGCTTGGGTGCACAGCTTGCCCGTGATGTTCCATTCTCAGCAATCTGCTGGTCGACCCTCGAGCCAgtaagatctttaacatgtttaagcgttttacgatgcagaaggtttattttaaggcagttttgccaaatacagtaagtgaattgctttgaccttcccttatgatacag
|||  | ||| ||||  || |||| |||| | || ||||| ||||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||||||| ||||    |  ||||  ||| |   ||     || |  | | || |    |   ||  | |    || |  |||| ||||   | |||   |        
TGCGGAGCTACCGTGTCCTGTGGACAGGCATTGGAGCACAACTTGCTCGTGATGTTCCTTTCTCTGCAATTTGTTGGTCAACCCTGGAGCCAgtaaga-ctttgttcttcttaacagttgttaaattttacagctgcagtctatgtacctaacgcacatttt--tatgctaatttcttttctcctcctgcacag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085091|gb|DR380850.1|DR380850
EST:     TTGCCCGTGATGTTCCATTCTCAGCAATCTGCTGGTCGACCCTCGAGCCA                         ATAAAAAAGAGGCTCCTTGGAGTTGCGGGCAATGATACAAATCTTGTTGGT
genomic: TTGCCCGTGATGTTCCATTCTCAGCAATCTGCTGGTCGACCCTCGAGCCAgtaagatctt ... tatgatacagATAAAAAAGAGGCTCCTTGGAGTTGCGGGCAATGATACAAATCTTGTTGGT