1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTTTTCGGTGCAACCTTTTCTGCTGGATTTATAGCTGGAAGTATCGCTGCTGCTGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAGgtttgtttgctttcctccagaaacatgtttgtttacttgtgtcaccatctcatgtttctcccttccattaattcag
species | Arabidopsis thaliana |
transcript | AT4G27940.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAG AAGGACCCTGGTAGGGCATTGATGATGACGACACGACAGACEST: gi|86085091|gb|DR380850.1|DR380850
genomic: TGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAGgtttgtttgc ... attaattcagAAGGACCCTGGTAGGGCATTGATGATGACGACACGACAGAC
EST: CTGCTGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAG AAGGACCCTGGTAGGGCATTGATGATGACGACACGACAGACACTAATAGAG
genomic: CTGCTGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAGgtttgtttgc ... attaattcagAAGGACCCTGGTAGGGCATTGATGATGACGACACGACAGACACTAATAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTTCGGTGCAACCTTTTCTGCTGGATTTATAGCTGGAAGTATCGCTGCTGCTGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAGgtttgtttgctttcctccagaaacatgtttgtttacttgtgtcaccatctcatgtttctcccttccattaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG