1 5' 3' | 2 5' 3' | 3 5' 3' |
TCTTATTACGTTACCCTCTCAACACTTTCTCCATGTCTTTCGGACAAGCTGCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGgtaacacatacacaaatcttgcttaatcttcttctgttttaaggtgttctgctccattaatcttctgtttttgttag
species | Arabidopsis thaliana |
transcript | AT4G27450.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAG GTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAAEST: gi|116459966|gb|EG502558.1|EG502558
genomic: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGgtaacacata ... tttttgttagGTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAA
EST: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAG GTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAAEST: gi|116459967|gb|EG502559.1|EG502559
genomic: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGgtaacacata ... tttttgttagGTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAA
EST: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAG GTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAAEST: gi|116428956|gb|EG471548.1|EG471548
genomic: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGgtaacacata ... tttttgttagGTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAA
EST: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAG GTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAAEST: gi|86043754|gb|DR339509.1|DR339509
genomic: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGgtaacacata ... tttttgttagGTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAA
EST: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAG GTTGNTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAAEST: gi|86043758|gb|DR339513.1|DR339513
genomic: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGgtaacacata ... tttttgttagGTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAA
EST: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAG GTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAAEST: gi|124854574|gb|EH939011.1|EH939011
genomic: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGgtaacacata ... tttttgttagGTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAA
EST: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAG GTTGTTTTGTGGAEST: gi|86043753|gb|DR339508.1|DR339508
genomic: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGgtaacacata ... tttttgttagGTTGTTTTGTGGA
EST: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAG GTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAA
genomic: GCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGgtaacacata ... tttttgttagGTTGTTTTGTGGATTTGATGACATCTACTGTCTCTTCTTTGGGAGCTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTATTACGTTACCCTCTCAACACTTTCTCCATGTCTTTCGGACAAGCTGCTGTTCTTGCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGgtaacacatacacaaatcttgcttaatcttcttctgttttaaggtgttctgctccattaatcttctgtttttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT