1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTGCTTCTGGGGGTTTGGTCTCAAAAGGATTCAGCAGGCCGCCAGATTTTGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttcttaacaccaaatcctacaggatagaaaagctttctcaaagtcacaagtgttgagtgtctgtttggtgcag
species | Arabidopsis thaliana |
transcript | AT4G25370.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCG ATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGAEST: gi|86078578|gb|DR374335.1|DR374335
genomic: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttct ... tttggtgcagATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGA
EST: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCG ATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGAEST: gi|116462728|gb|EG505320.1|EG505320
genomic: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttct ... tttggtgcagATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGA
EST: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCG ATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGAEST: gi|86036186|gb|DR331939.1|DR331939
genomic: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttct ... tttggtgcagATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGA
EST: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCG ATGAATGAAGATGTAGATTTGAGCTTEST: gi|125082437|gb|EL143330.1|EL143330
genomic: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttct ... tttggtgcagATGAATGAAGATGTAGATTTGAGCTT
EST: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCG ATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATA
genomic: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttct ... tttggtgcagATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCTTCTGGGGGTTTGGTCTCAAAAGGATTCAGCAGGCCGCCAGATTTTGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttcttaacaccaaatcctacaggatagaaaagctttctcaaagtcacaagtgttgagtgtctgtttggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT