Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGTAAGAAGCTTCTGGCGACACAACCGTCGCATCGCTGCTTCGTCCCCAAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagtttttttatctgacagctcttttacatctttatcatttctgggtttttcctttcaccacggatattgaagcttagggtgttaaggttgaatttttcag

Basic information

species Arabidopsis thaliana
transcript AT4G25370.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036181|gb|DR331934.1|DR331934
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036191|gb|DR331944.1|DR331944
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|47830527|gb|CK120211.1|CK120211
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036195|gb|DR331948.1|DR331948
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|125275075|gb|EL289160.1|EL289160
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATACCCAAAATGGTC
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGAT-CCCAAAATGGTC
EST: gi|86036182|gb|DR331935.1|DR331935
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|47828108|gb|CK117792.1|CK117792
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036189|gb|DR331942.1|DR331942
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036183|gb|DR331936.1|DR331936
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036190|gb|DR331943.1|DR331943
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036188|gb|DR331941.1|DR331941
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036196|gb|DR331949.1|DR331949
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036193|gb|DR331946.1|DR331946
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036186|gb|DR331939.1|DR331939
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036194|gb|DR331947.1|DR331947
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036192|gb|DR331945.1|DR331945
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036197|gb|DR331950.1|DR331950
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|86036185|gb|DR331938.1|DR331938
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
EST: gi|124853092|gb|EH937529.1|EH937529
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGA
EST: gi|86036198|gb|DR331951.1|DR331951
EST:     AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGC                         GCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA
genomic: AAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCgttagttttt ... aatttttcagGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAA