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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcttaacaccaaatcctacaggatagaaaagctttctcaaagtcacaagtgttgagtgtctgtttggtgcagATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGAGGTTTATATCGATTAGAAAAGCTTCTGTAATTGTTATGGAGTAGCAAAA

Basic information

species Arabidopsis thaliana
transcript AT4G25370.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830527|gb|CK120211.1|CK120211
EST:     TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCG                         ATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGA
genomic: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttct ... tttggtgcagATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGA
EST: gi|86078578|gb|DR374335.1|DR374335
EST:     TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCG                         ATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGA
genomic: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttct ... tttggtgcagATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGA
EST: gi|116462728|gb|EG505320.1|EG505320
EST:     TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCG                         ATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGA
genomic: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttct ... tttggtgcagATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGA
EST: gi|86036186|gb|DR331939.1|DR331939
EST:     TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCG                         ATGAATGAAGATGTAGATTTGAGCTT
genomic: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttct ... tttggtgcagATGAATGAAGATGTAGATTTGAGCTT
EST: gi|125082437|gb|EL143330.1|EL143330
EST:     TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCG                         ATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATA
genomic: TGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGgtaagtttct ... tttggtgcagATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaggatagaaaagctttctcaaagtcacaagtgttgagtgtctgtttggtgcagATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAGTGATGAGGTTTATATCGATTAGAAAAGCTTCTGTAATTGTTATGGAGTAGCAAAA
                                         tctgttt  CT-rich tract
     atagaaaa  TA-rich tract