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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACATTAAACAAAGGGCTGACATTGCAAAATATGGAGGACCTCATCCAAATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatattcctacacgttcgttctagtacgattcaagtgaactttgtttctgtcggagtactctcaccagatccttatttttgtctttgcttcttttgatcttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G20095.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482096|gb|EG524688.1|EG524688
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482101|gb|EG524693.1|EG524693
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482088|gb|EG524680.1|EG524680
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAAAC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAA-C
EST: gi|116482075|gb|EG524667.1|EG524667
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482084|gb|EG524676.1|EG524676
EST:     ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: gi|116482082|gb|EG524674.1|EG524674
EST:     CAATGTGCAAAAT                         GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: CAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC