1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatatattcctacacgttcgttctagtacgattcaagtgaactttgtttctgtcggagtactctcaccagatccttatttttgtctttgcttcttttgatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCTCGATTCTTTCTCATTTCATAAGTTTGGAGGCAATGGATCCAGTAGACA
species | Arabidopsis thaliana |
transcript | AT4G20095.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCEST: gi|116482101|gb|EG524693.1|EG524693
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCEST: gi|116482088|gb|EG524680.1|EG524680
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAAACEST: gi|116482075|gb|EG524667.1|EG524667
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAA-C
EST: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCEST: gi|116482084|gb|EG524676.1|EG524676
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAAT GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCEST: gi|116482082|gb|EG524674.1|EG524674
genomic: ATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
EST: CAATGTGCAAAAT GGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
genomic: CAATCTGCAAAATgtaatatatt ... gatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACC
tcggagtactctcaccagatccttatttttgtctttgcttcttttgatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCTCGATTCTTTCTCATTTCATAAGTTTGGAGGCAATGGATCCAGTAGACA
tccttatttttgtctt CT-rich tract
ttatttttgtcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatattcctacacgttcgttctagtacgattcaagtgaactttgtttctgtcggagtactctcaccagatccttatttttgtctttgcttcttttgatcttgtagGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCTCGATTCTTTCTCATTTCATAAGTTTGGAGGCAATGGATCCAGTAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG