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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTTGGTCGAGGAACCATCGCAGAGTAATGAGAAGCTGGAAGATCAGAGACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggatttgattgtggatgtatgaactttaggtctcatcactcatagagatatttgcattttaaagcttatagattctgtgttttgtttag

Basic information

species Arabidopsis thaliana
transcript AT4G20095.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482096|gb|EG524688.1|EG524688
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482101|gb|EG524693.1|EG524693
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482083|gb|EG524675.1|EG524675
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482075|gb|EG524667.1|EG524667
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
EST: gi|116482084|gb|EG524676.1|EG524676
EST:     GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGG                         AGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC
genomic: GACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGgtaattggat ... ttttgtttagAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGAC