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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAAgtaagaatctttaaacgatgattccttgcaaattacattctttggctacaaaatcctcactgtatagttgttgtacacag

Basic information

species Arabidopsis thaliana
transcript AT4G18710.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125054944|gb|EL125411.1|EL125411
EST:     TTATTTCCCGGAGAAAATGTTGTGGATCAGCTCGTTGAAATTATAAAA                         GTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTAC
genomic: TTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAAgtaagaatct ... ttgtacacagGTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTAC
EST: gi|124742043|gb|EH833205.1|EH833205
EST:     CATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAA                         GTTCTTGGTACACCAACTCGAGAAGAAATCCGTT
genomic: CATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAAgtaagaatct ... ttgtacacagGTTCTTGGTACACCAACTCGAGAAGAAATCCGTT
EST: gi|116451981|gb|EG494573.1|EG494573
EST:     CATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAA                         GTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTAC
genomic: CATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAAgtaagaatct ... ttgtacacagGTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTAC
EST: gi|125078844|gb|EL141074.1|EL141074
EST:     GAAACTATAAAA                         GTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTAC
genomic: GAAATTATAAAAgtaagaatct ... ttgtacacagGTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTAC
EST: gi|116452048|gb|EG494640.1|EG494640
EST:     CATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAA                         GTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTAC
genomic: CATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAAgtaagaatct ... ttgtacacagGTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTAC
EST: gi|125223497|gb|EL237582.1|EL237582
EST:     CATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAA                         GTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTAC
genomic: CATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAAgtaagaatct ... ttgtacacagGTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTAC
EST: gi|125158332|gb|EL186977.1|EL186977
EST:     CATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAA                         GTTCTTGGTACACCAACTCGAGAAG
genomic: CATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAAgtaagaatct ... ttgtacacagGTTCTTGGTACACCAACTCGAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAAgtaagaatctttaaacgatgattccttgcaaattacattctttggctacaaaatcctcactgtatagttgttgtacacag

- - - - - - GGAGAA
- - - - - - - - -  ATGCTG
- - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - CAGCTC