1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatttttaaggcttttaaccaaatagactcacttttatgtatatgcaagattttgatggttaccaatacatttttctatgttgttgttagACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATCGTTTTCCAAGCAAAATGTTTGGAGACTGGAGAAACCGTGGCGATAAAGA
species | Arabidopsis thaliana |
transcript | AT4G18710.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAG ACAATTAGTTACATGGCGGA-SGAGTTGTTGGTACAGGCTCGTTCGGGATCEST: gi|86056751|gb|DR352508.1|DR352508
genomic: GTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAGgtatttttaa ... ttgttgttagACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC
EST: GTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAG ACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATCEST: gi|124818357|gb|EH903223.1|EH903223
genomic: GTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAGgtatttttaa ... ttgttgttagACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC
EST: CAATCGGTGGCGAAAATGGTGAACCAAAACAG ACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATCEST: gi|124970938|gb|EL044739.1|EL044739
genomic: CAATCGGTGGCAAAAATGGTGAACCAAAACAGgtatttttaa ... ttgttgttagACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC
EST: TCGGTGGCAAAAATGGTGAACCAAAACAG ACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC
genomic: TCGGTGGCAAAAATGGTGAACCAAAACAGgtatttttaa ... ttgttgttagACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC
tatgtatatgcaagattttgatggttaccaatacatttttctatgttgttgttagACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATCGTTTTCCAAGCAAAATGTTTGGAGACTGGAGAAACCGTGGCGATAAAGA
ttttgat putative branch site (score: 4)
aatacatttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttaaggcttttaaccaaatagactcacttttatgtatatgcaagattttgatggttaccaatacatttttctatgttgttgttagACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATCGTTTTCCAAGCAAAATGTTTGGAGACTGGAGAAACCGTGGCGATAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA