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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAGgtatttttaaggcttttaaccaaatagactcacttttatgtatatgcaagattttgatggttaccaatacatttttctatgttgttgttag

Basic information

species Arabidopsis thaliana
transcript AT4G18710.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G18710.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 2
GAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAGgtat------ttttaaggcttttaaccaaatagactcac---ttttatgtatatgcaagatt-ttgatggttaccaatacatttttctatgttgttgttag
|| ||  ||||  |||| ||||||||  ||||||  ||||| ||||| || |||||||||||||| || || |||||||| || || ||||||||||      ||| || ||    || ||| |   ||  |   || |  ||  |   | |||| |  | ||||    |||  | ||   ||| |      ||
GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactactttgaatgcccacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86056759|gb|DR352516.1|DR352516
EST:     GTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAG                         ACAATTAGTTACATGGCGGA-SGAGTTGTTGGTACAGGCTCGTTCGGGATC
genomic: GTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAGgtatttttaa ... ttgttgttagACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC
EST: gi|86056751|gb|DR352508.1|DR352508
EST:     GTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAG                         ACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC
genomic: GTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAGgtatttttaa ... ttgttgttagACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC
EST: gi|124818357|gb|EH903223.1|EH903223
EST:     CAATCGGTGGCGAAAATGGTGAACCAAAACAG                         ACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC
genomic: CAATCGGTGGCAAAAATGGTGAACCAAAACAGgtatttttaa ... ttgttgttagACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC
EST: gi|124970938|gb|EL044739.1|EL044739
EST:     TCGGTGGCAAAAATGGTGAACCAAAACAG                         ACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC
genomic: TCGGTGGCAAAAATGGTGAACCAAAACAGgtatttttaa ... ttgttgttagACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATC