Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGACTGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGgtagttagttagatactaatacacgagagtttacataaggctcatttcaggatccgcgagagcaatattattaagttgatatcgtttcttttccatag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G17190.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G17190.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA15G12780.1 (Glycine max), 5'ss of exon 8
GTTGCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGACTGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGgtagt---tagttagatactaatacacgagagtttacataaggctcatttcaggatccgcgagagcaatattattaagttgatatcgtttctttt--ccatag--------------------------------------------------------------
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GTTGCATGTGCATTGCTCATGGCGGGTGAGGATCTTGACAACCATGTTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatactttgttataggtttgacctcttggctttctttagagatcctttt--gactctagaatgctgtctgtatgtctacatattgccctcatcagctataaatattttttaaaaactgtattataacctatcttttctctatccttttcccctctcattttag
upper sequence: AT4G17190.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G01820.3 (Glycine max), 5'ss of exon 8
GTTGCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGACTGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGgtagt---tagttagatactaatacacgagagtttacataaggctcatttcaggatccgcgagagcaatattattaagttgatatcgtttcttttccatag--------------
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GTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatactttgttataggtttgacctcttggctttctttagagatcattt--agactctagaatgctgtattataacctatcttttttctctttccttttcccctctcattttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86087857|gb|DR383616.1|DR383616EST: TGACATGGGAATTTACTTTCAAGTACAG GATGATTATCTGGACTGTTTTGCTGATCCTGAGACACTTGGCAAG
genomic: TGACATGGGAATTTACTTTCAAGTACAGgtagttagtt ... ttttccatagGATGATTATCTGGACTGTTTTGCTGATCCTGAGACACTTGGCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGACTGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGgtagttagttagatactaatacacgagagtttacataaggctcatttcaggatccgcgagagcaatattattaagttgatatcgtttcttttccatag
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