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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTgtgagtactctgaatccctctctctatatatatatatatagagtcacacgtaggttcagaggttgcagcataatttatttcgtaagctagacacattctg...

Basic information

species Arabidopsis thaliana
transcript AT4G17190.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G147721_T01 (Zea mays), 5'ss of exon 6
CCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTgtgagtactctgaatccctctctctatatatat-atatatagagtcacacgtaggttcagaggttgcagca-taatttatttcgtaagctagacacattctg
 |  || |  || ||| ||||||| ||||||||||| |||||||| |||||||| ||   |   | ||  | | |   | |   | || |  |   |  ||      ||    |  ||  | |  || ||  | |       |           
TCGCCGCCACATCGTTCAGTACAAGACAGCTTATTATTCATTTTACCTTCCTgtaagagttaccactctatatattcctctcagtcatttggatgttaccattctaatttgatgagtgtggtaacaagttcctactcctctcaag---------

upper sequence: AT4G17190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 7
CCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTgtgagtactctgaatccctctctctatatatatatatatagagtcacacgtaggt-tcagaggttgcagcataatttatttcgtaagctagacacattctg------
 || || || |||||| |||||||||| ||||||||||||||||| ||||| || ||    || |    |||||||||   | |    | | |  |  ||| |   | | | |   ||| |  |  ||  |||  |   ||  |   | |         
TCACCGCCGCATTGTTCAGTACAAAACTGCTTATTACTCATTTTACCTTCCAgtaag----ctaag---ctctctctactaagaacggttttgtattccactttattgttaaatcatgctgattttttatttttttttactgaagttacttgaggctat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163966969|gb|ES008684.1|ES008684
EST:     ATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCT                         GTTGCTTGCGCATTGCTCATGGCGGGAG
genomic: ATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTgtgagtactc ... ttgcactcagGTTGCTTGCGCATTGCTCATGGCGGGAG