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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagatatcattcaaatttttaatggatgatgtagtgaagtaggattacatgtgtttgactgatgattatagtttgctctaaaacgtgcagCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCT

Basic information

species Arabidopsis thaliana
transcript AT4G17190.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17190.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 6
----gtgagagatatcattcaaatttttaatggatgatgt----agtgaagtaggattacatgtgtttgactgatg---------attat-agtttgctctaaaac-gtgcagCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCT
    ||||||  |   ||    ||| ||  |  ||  |      | | || |  |||| ||| | |||  ||  ||         ||||| |  | | | |    |  ||||| || || || |||||| |||||||||| ||||||||||||||||| ||||| 
gtaagtgagaattcaaatagtgattcttgttttattttacttacaatcaattttgattccatttttttttcttgtgtttcttttaattatcaagtggttgtgtttccatgcagTCACCGCCGCATTGTTCAGTACAAAACTGCTTATTACTCATTTTACCTTCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164204641|gb|ES138962.1|ES138962
EST:     ATCACCACCTTTGATGGAG-AAAAGATTTGTCTAAGTACTCCTTGCAAAT                         CCATCGGCGTATTGTTGAGTACAA
genomic: ATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTGCAAATgtgagagata ... aaacgtgcagCCATCGGCGTATTGTTGAGTACAA
EST: gi|163966969|gb|ES008684.1|ES008684
EST:     TCTAAGTACTCCTTGCAAAT                         CCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCC
genomic: TCTAAGTACTCCTTGCAAATgtgagagata ... aaacgtgcagCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtaggattacatgtgtttgactgatgattatagtttgctctaaaacgtgcagCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCT
                                        ctctaaa  putative branch site (score: 3)
                             attatagttt  TA-rich tract