Sequence
atgc intronic sequence ATGC exonic sequenceCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTgtgagtactctgaatccctctctctatatatatatatatagagtcacacgtaggttcagaggttgcagcataatttatttcgtaagctagacacattctg...
Basic information
species | Arabidopsis thaliana |
transcript | AT4G17190.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G17190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G147721_T01 (Zea mays), 5'ss of exon 6
CCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTgtgagtactctgaatccctctctctatatatat-atatatagagtcacacgtaggttcagaggttgcagca-taatttatttcgtaagctagacacattctg
| || | || ||| ||||||| ||||||||||| |||||||| |||||||| || | | || | | | | | | || | | | || || | || | | || || | | |
TCGCCGCCACATCGTTCAGTACAAGACAGCTTATTATTCATTTTACCTTCCTgtaagagttaccactctatatattcctctcagtcatttggatgttaccattctaatttgatgagtgtggtaacaagttcctactcctctcaag---------
upper sequence: AT4G17190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 7
CCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTgtgagtactctgaatccctctctctatatatatatatatagagtcacacgtaggt-tcagaggttgcagcataatttatttcgtaagctagacacattctg------
|| || || |||||| |||||||||| ||||||||||||||||| ||||| || || || | ||||||||| | | | | | | ||| | | | | | ||| | | || ||| | || | | |
TCACCGCCGCATTGTTCAGTACAAAACTGCTTATTACTCATTTTACCTTCCAgtaag----ctaag---ctctctctactaagaacggttttgtattccactttattgttaaatcatgctgattttttatttttttttactgaagttacttgaggctatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|163966969|gb|ES008684.1|ES008684EST: ATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCT GTTGCTTGCGCATTGCTCATGGCGGGAG
genomic: ATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTgtgagtactc ... ttgcactcagGTTGCTTGCGCATTGCTCATGGCGGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTgtgagtactctgaatccctctctctatatatatatatatagagtcacacgtaggttcagaggttgcagcataatttatttcgtaagctagacacattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctct