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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactccttcgattcacttccattttcacttaaactcagatcctttgatgaatttgtttctgctgattggaacctctttttgcagATGCTTGACTACAATGTACGCGGAG

Basic information

species Arabidopsis thaliana
transcript AT4G17190.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068828|gb|DR364585.1|DR364585
EST:     AAGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGG                         ATGCTTGACTACAATGTACGCGGAG
genomic: AAGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGGgtactccttc ... ctttttgcagATGCTTGACTACAATGTACGCGGAG
EST: gi|86068826|gb|DR364583.1|DR364583
EST:     AAGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGG                         ATGCTTGACTACAATGTACGCGGAG
genomic: AAGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGGgtactccttc ... ctttttgcagATGCTTGACTACAATGTACGCGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaactcagatcctttgatgaatttgtttctgctgattggaacctctttttgcagATGCTTGACTACAATGTACGCGGAG
                              tgctgat  putative branch site (score: 3)
                                          cctctttttgc  putative PPT
                    aatttgttt  TA-rich tract