1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttatctctttcatccttctcttaatattacgacttacagttatcaccagcttgttcaaagtttctttacattgttctagGTAGAGTTTCAAACAGCTTGCGGCCAGATGATTGATTTGATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTGCAAAT
species | Arabidopsis thaliana |
transcript | AT4G17190.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTTCAGGGAAATGCCTTACTATGTTGACCTCGTTGATTTGTTTAACGAG GTAGAGTTTCAAAEST: gi|86068828|gb|DR364585.1|DR364585
genomic: ACTTCAGGGAAATGCCTTACTATGTTGACCTCGTTGATTTGTTTAACGAGgtttatctct ... attgttctagGTAGAGTTTCAAA
EST: ACTTCAGGGAAATGCCTTACTATGTTGACCTCGTTGATTTGTTTAACGAG GTAGAGTT-CAA-CAGCTTGC
genomic: ACTTCAGGGAAATGCCTTACTATGTTGACCTCGTTGATTTGTTTAACGAGgtttatctct ... attgttctagGTAGAGTTTCAAACAGCTTGC
tattacgacttacagttatcaccagcttgttcaaagtttctttacattgttctagGTAGAGTTTCAAACAGCTTGCGGCCAGATGATTGATTTGATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTGCAAAT
gacttac putative branch site (score: 2)
ttgttct putative PPT
tttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttatctctttcatccttctcttaatattacgacttacagttatcaccagcttgttcaaagtttctttacattgttctagGTAGAGTTTCAAACAGCTTGCGGCCAGATGATTGATTTGATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTGCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA