1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGGCTTCCTATATACTTGGATAAGATATTCAATGAGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGgtatgctttgatcttctacctttaaagtcttgctaggtttataagcttcatgagatttgaacactgtttttttttcag
species | Arabidopsis thaliana |
transcript | AT4G14230.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAG GTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCAEST: gi|47830040|gb|CK119724.1|CK119724
genomic: AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGgtatgctttg ... tttttttcagGTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCA
EST: AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAG GTTATTCCTCAAGCTATACGTACTAGATATGGACTAGCAGTGGGAGCTAATEST: gi|86061013|gb|DR356770.1|DR356770
genomic: AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGgtatgctttg ... tttttttcagGTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAAT
EST: AGTATGTTGCTATTATTCTATCCGTCAMTTTCGTTCTATTCGTTGGAGAG GTTATTCCTCAAGCTATATGTACTAGATATEST: gi|86061017|gb|DR356774.1|DR356774
genomic: AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGgtatgctttg ... tttttttcagGTTATTCCTCAAGCTATATGTACTAGATAT
EST: AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAG GTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTA
genomic: AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGgtatgctttg ... tttttttcagGTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCTTCCTATATACTTGGATAAGATATTCAATGAGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGgtatgctttgatcttctacctttaaagtcttgctaggtttataagcttcatgagatttgaacactgtttttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA