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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttgatcttctacctttaaagtcttgctaggtttataagcttcatgagatttgaacactgtttttttttcagGTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAATTTGGTCTGGCTTGTTCGTATCTTAATGGTTCTATCGTACCCGATATCTT

Basic information

species Arabidopsis thaliana
transcript AT4G14230.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14230.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G045892_T01 (Zea mays), 3'ss of exon 3
gtatgctttg--atcttctacctttaaagtcttgctaggtttataagcttcatgagatttgaacactgtttttttttcagGTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAATTTGGTCTGGCTTGTTCGTATCTTAATGGTTCTATCGTACCCGATATCTT
|||| | |    ||   | |  ||||   | |||||   | | |  | || |       |||     || ||     |||||||| || ||||| || ||||| |||||||| ||||||||||| ||||| || || ||||| || || ||  | |||||  | |  || || || ||||
gtattcatcagaatgagcaaaatttactat-ttgctcattgtgtg-gtttgac------tgatagtagtgttaacaccagGTTATACCGCAAGCAATCTGTACCAGATATGGCCTAGCAGTGGGTGCTAACTTTGTATGGCTCGTACGCATTCTCATGGTCATTTGCTATCCAATTTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86061015|gb|DR356772.1|DR356772
EST:     AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAG                         GTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCA
genomic: AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGgtatgctttg ... tttttttcagGTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCA
EST: gi|47830040|gb|CK119724.1|CK119724
EST:     AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAG                         GTTATTCCTCAAGCTATACGTACTAGATATGGACTAGCAGTGGGAGCTAAT
genomic: AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGgtatgctttg ... tttttttcagGTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAAT
EST: gi|86061013|gb|DR356770.1|DR356770
EST:     AGTATGTTGCTATTATTCTATCCGTCAMTTTCGTTCTATTCGTTGGAGAG                         GTTATTCCTCAAGCTATATGTACTAGATAT
genomic: AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGgtatgctttg ... tttttttcagGTTATTCCTCAAGCTATATGTACTAGATAT
EST: gi|86061017|gb|DR356774.1|DR356774
EST:     AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAG                         GTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTA
genomic: AGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGgtatgctttg ... tttttttcagGTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagtcttgctaggtttataagcttcatgagatttgaacactgtttttttttcagGTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAATTTGGTCTGGCTTGTTCGTATCTTAATGGTTCTATCGTACCCGATATCTT
                                      cactgtttttttttc  CT-rich tract
                                         tgttttttttt  TA-rich tract